Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pantothenate kinase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10929 g10929.t7 isoform g10929.t7 12824525 12828080
chr_1 g10929 g10929.t7 exon g10929.t7.exon1 12824525 12824915
chr_1 g10929 g10929.t7 cds g10929.t7.CDS1 12824525 12824915
chr_1 g10929 g10929.t7 exon g10929.t7.exon2 12827081 12827256
chr_1 g10929 g10929.t7 cds g10929.t7.CDS2 12827081 12827256
chr_1 g10929 g10929.t7 exon g10929.t7.exon3 12827833 12827935
chr_1 g10929 g10929.t7 cds g10929.t7.CDS3 12827833 12827935
chr_1 g10929 g10929.t7 exon g10929.t7.exon4 12828013 12828080
chr_1 g10929 g10929.t7 cds g10929.t7.CDS4 12828013 12828080
chr_1 g10929 g10929.t7 TSS g10929.t7 NA NA
chr_1 g10929 g10929.t7 TTS g10929.t7 NA NA

Sequences

>g10929.t7 Gene=g10929 Length=738
ATGGCTTCATTGTATGTAAAATATCCAAAAACCTGCCGCAATAAAAAGTCTAGTGTCTAT
CTGACACCACCTGTCTCATCGATCTCATCATCTTCATCAGGCTCATTGTCGAGCGCTGAT
GGTATTAAGCCAGCTTCATTAATCAATTCTCAAAAATCATCAAAACGTAAACAACATTAT
TATCCTCACCATCATCATATGAGAAGTCACAAGGTCTCGACAATGCCAAAACGTCGAAAA
TTAAAGCTTAAAAAATCATCAGCTTCATCGTCTGCTGCAGCGACAAGCAGTGACAGCGAC
ACAAACAAACTCAATGAATGCCGGTCGTTCATCAACAATAATGCTCAAGAAGAAATCAAC
CGAAATAATTGTGACTGTGACTTTCAAACATTACCAGCAATTGGAGTCGATGTAGGTGGG
ACGTTAACCAAATTAGTTTATTTTGAACCAAATGACGAAGAAGAATATGGTGGAGAATTG
GAAGCAAAAGTACTCAAAAACATTCGTAGATATTTGACGAAAAATTCAGCTTATGGAAAT
ACAGGTCATCGCGATATACATTTACAGATGAACAATGTGGAGATTCATAATAAGAAGGGT
ACACTGCACTTTATTAGATTTCCCACAGCGGAGATGAGTTCATTTCTGCAATTGGCAAAG
TCAAAAGGAATGGCGATGCTTCTGACAACTGTTTGTGCAACTGGCGGTGGTGCTTTCAAA
TTTGAGGAAGAATTTAGA

>g10929.t7 Gene=g10929 Length=246
MASLYVKYPKTCRNKKSSVYLTPPVSSISSSSSGSLSSADGIKPASLINSQKSSKRKQHY
YPHHHHMRSHKVSTMPKRRKLKLKKSSASSSAAATSSDSDTNKLNECRSFINNNAQEEIN
RNNCDCDFQTLPAIGVDVGGTLTKLVYFEPNDEEEYGGELEAKVLKNIRRYLTKNSAYGN
TGHRDIHLQMNNVEIHNKKGTLHFIRFPTAEMSSFLQLAKSKGMAMLLTTVCATGGGAFK
FEEEFR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g10929.t7 Gene3D G3DSA:3.30.420.510 - 126 246 4.0E-46
5 g10929.t7 MobiDBLite mobidb-lite consensus disorder prediction 46 99 -
6 g10929.t7 MobiDBLite mobidb-lite consensus disorder prediction 56 85 -
2 g10929.t7 PANTHER PTHR12280:SF23 PANTOTHENATE KINASE 1 92 246 1.1E-44
3 g10929.t7 PANTHER PTHR12280 PANTOTHENATE KINASE 92 246 1.1E-44
1 g10929.t7 Pfam PF03630 Fumble 134 245 1.6E-16
4 g10929.t7 SUPERFAMILY SSF53067 Actin-like ATPase domain 132 245 6.8E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004594 pantothenate kinase activity MF
GO:0015937 coenzyme A biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed