Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10937 g10937.t6 TTS g10937.t6 12865116 12865116
chr_1 g10937 g10937.t6 isoform g10937.t6 12865743 12866562
chr_1 g10937 g10937.t6 exon g10937.t6.exon1 12865743 12866194
chr_1 g10937 g10937.t6 cds g10937.t6.CDS1 12865743 12866194
chr_1 g10937 g10937.t6 exon g10937.t6.exon2 12866249 12866562
chr_1 g10937 g10937.t6 cds g10937.t6.CDS2 12866249 12866534
chr_1 g10937 g10937.t6 TSS g10937.t6 12866761 12866761

Sequences

>g10937.t6 Gene=g10937 Length=766
AATTTTCTCTGCAGTTGCAAATGTATGCATGATCACAGGTGTTTCAATGACACTTTATTA
CTGTTTTATTGATTTACCACCAATAACTGAACACAATTTTGTAAGATTTGATACATTGCC
ACTCTATTTTGGGACAGCATTATTTGCATTTGAAGGAATCACACTCGTTTTACCACTTCA
TAATGTGATGAAAAAACCTGAAAATTTTTCAAAATTTCCATTTGGTGTGTTGCATGTTGG
AATGTCACTTGTGAGTTTCATTTATGTCCTACTTGGATTTATGGGATATTGGAAATTTGG
AGAACAAACTGAAGGATCAATAACTCTCAATCTTCCAACTAATGAAATTCTTGCACAAGT
TATAATTGTCATGGCATCCTTTGGTGTTTTATTTTCATATGCACTTCAATTTTTTGTTGG
AATTCATATAATTCTGCCACCAATTTTTCGAAATTCAAAGACTGCAGCAAAATTTCCAAT
TTATACTGAACAAATTTTTAGAACATTGATGGTTTTCGTGACTTTTATAATTGCCATGCT
CGTTCCTGATTTAAGTTTATTATTAAGTTTGATAGGCTCAGTTTGTTGTGTGATATTGGC
GTTTGTATTTCCATCAATTGTTGAACTTATGACAAGATATGATGAAGGAAAAATTGGAAC
ATTTTATTGGATTAAAAATATAATTATTTTGACCATTGCCTTATGTGGATTTATATTAGG
TGGCGGCCTCGCATTGATTAATATTTATGAAGAATTCATAGCATAA

>g10937.t6 Gene=g10937 Length=245
MITGVSMTLYYCFIDLPPITEHNFVRFDTLPLYFGTALFAFEGITLVLPLHNVMKKPENF
SKFPFGVLHVGMSLVSFIYVLLGFMGYWKFGEQTEGSITLNLPTNEILAQVIIVMASFGV
LFSYALQFFVGIHIILPPIFRNSKTAAKFPIYTEQIFRTLMVFVTFIIAMLVPDLSLLLS
LIGSVCCVILAFVFPSIVELMTRYDEGKIGTFYWIKNIIILTIALCGFILGGGLALINIY
EEFIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g10937.t6 PANTHER PTHR22950 AMINO ACID TRANSPORTER 1 242 1.6E-62
3 g10937.t6 PANTHER PTHR22950:SF150 FI17861P1 1 242 1.6E-62
1 g10937.t6 Pfam PF01490 Transmembrane amino acid transporter protein 23 230 1.9E-38
16 g10937.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 31 -
19 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 32 51 -
11 g10937.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 52 62 -
18 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 63 87 -
15 g10937.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 88 106 -
22 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 107 136 -
10 g10937.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 137 155 -
17 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 156 172 -
14 g10937.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 173 177 -
21 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 178 198 -
12 g10937.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 199 217 -
20 g10937.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 218 240 -
13 g10937.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 241 245 -
9 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 30 52 -
5 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -
7 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 107 129 -
4 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 150 172 -
8 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 176 198 -
6 g10937.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 218 240 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values