Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10937 g10937.t7 TTS g10937.t7 12865116 12865116
chr_1 g10937 g10937.t7 isoform g10937.t7 12865743 12866622
chr_1 g10937 g10937.t7 exon g10937.t7.exon1 12865743 12866194
chr_1 g10937 g10937.t7 cds g10937.t7.CDS1 12865743 12866194
chr_1 g10937 g10937.t7 exon g10937.t7.exon2 12866249 12866524
chr_1 g10937 g10937.t7 cds g10937.t7.CDS2 12866249 12866516
chr_1 g10937 g10937.t7 exon g10937.t7.exon3 12866621 12866622
chr_1 g10937 g10937.t7 TSS g10937.t7 12866761 12866761

Sequences

>g10937.t7 Gene=g10937 Length=730
AGGTGTTTCAATGACACTTTATTACTGTTTTATTGATTTACCACCAATAACTGAACACAA
TTTTGTAAGATTTGATACATTGCCACTCTATTTTGGGACAGCATTATTTGCATTTGAAGG
AATCACACTCGTTTTACCACTTCATAATGTGATGAAAAAACCTGAAAATTTTTCAAAATT
TCCATTTGGTGTGTTGCATGTTGGAATGTCACTTGTGAGTTTCATTTATGTCCTACTTGG
ATTTATGGGATATTGGAAATTTGGAGAACAAACTGAAGGATCAATAACTCTCAATCTTCC
AACTAATGAAATTCTTGCACAAGTTATAATTGTCATGGCATCCTTTGGTGTTTTATTTTC
ATATGCACTTCAATTTTTTGTTGGAATTCATATAATTCTGCCACCAATTTTTCGAAATTC
AAAGACTGCAGCAAAATTTCCAATTTATACTGAACAAATTTTTAGAACATTGATGGTTTT
CGTGACTTTTATAATTGCCATGCTCGTTCCTGATTTAAGTTTATTATTAAGTTTGATAGG
CTCAGTTTGTTGTGTGATATTGGCGTTTGTATTTCCATCAATTGTTGAACTTATGACAAG
ATATGATGAAGGAAAAATTGGAACATTTTATTGGATTAAAAATATAATTATTTTGACCAT
TGCCTTATGTGGATTTATATTAGGTGGCGGCCTCGCATTGATTAATATTTATGAAGAATT
CATAGCATAA

>g10937.t7 Gene=g10937 Length=239
MTLYYCFIDLPPITEHNFVRFDTLPLYFGTALFAFEGITLVLPLHNVMKKPENFSKFPFG
VLHVGMSLVSFIYVLLGFMGYWKFGEQTEGSITLNLPTNEILAQVIIVMASFGVLFSYAL
QFFVGIHIILPPIFRNSKTAAKFPIYTEQIFRTLMVFVTFIIAMLVPDLSLLLSLIGSVC
CVILAFVFPSIVELMTRYDEGKIGTFYWIKNIIILTIALCGFILGGGLALINIYEEFIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g10937.t7 PANTHER PTHR22950 AMINO ACID TRANSPORTER 2 236 6.5E-61
3 g10937.t7 PANTHER PTHR22950:SF150 FI17861P1 2 236 6.5E-61
1 g10937.t7 Pfam PF01490 Transmembrane amino acid transporter protein 18 224 5.1E-39
16 g10937.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 25 -
19 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 26 45 -
10 g10937.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 46 56 -
18 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 57 81 -
14 g10937.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 82 100 -
21 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 101 130 -
11 g10937.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 131 149 -
17 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 150 166 -
15 g10937.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 167 171 -
20 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 172 192 -
12 g10937.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 211 -
22 g10937.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 212 234 -
13 g10937.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 235 239 -
4 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 24 46 -
6 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 59 81 -
5 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 101 123 -
9 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 144 166 -
8 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -
7 g10937.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 212 234 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values