General information for g10980.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dihydropyrimidinase-related protein 2.
Parent gene
- The parent gene g10980 is located on chr_1: 13116202..13117650 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10980 | g10980.t10 | isoform | g10980.t10 | 13116202 | 13117650 |
| chr_1 | g10980 | g10980.t10 | exon | g10980.t10.exon1 | 13116202 | 13116582 |
| chr_1 | g10980 | g10980.t10 | cds | g10980.t10.CDS1 | 13116204 | 13116582 |
| chr_1 | g10980 | g10980.t10 | exon | g10980.t10.exon2 | 13116655 | 13117058 |
| chr_1 | g10980 | g10980.t10 | cds | g10980.t10.CDS2 | 13116655 | 13117058 |
| chr_1 | g10980 | g10980.t10 | exon | g10980.t10.exon3 | 13117606 | 13117650 |
| chr_1 | g10980 | g10980.t10 | cds | g10980.t10.CDS3 | 13117606 | 13117650 |
| chr_1 | g10980 | g10980.t10 | TSS | g10980.t10 | NA | NA |
| chr_1 | g10980 | g10980.t10 | TTS | g10980.t10 | NA | NA |
Sequences
>g10980.t10 Gene=g10980 Length=830
ATGGACGCCCCAAAGCCAGTTAAGAAAATTCCAATTCACGTTCAGAGCTCGCAAAATAGG
CTCTACATAAAGCGGGCACGAGTAGTAAATCATGATTCGATATTGACAAACGTTGACATT
TACATTGAAGACGGAACGATCAAGTTCATCGGCAGCCCAGCAGACTTTGTAGTTCCTGGC
GGTGTGCGAGTAATTGATGTTGCAGGAAAATATGTTTTCCCAGGTGGCATTGATCCTAAT
ACTCAATTTGAAAGCGAATCGAATGGATTTGTATCCGCAGACACTTTTTATAGTGGAACA
AAAGCTGCAGTTGCAGGTGGTACCACTTGCATCATTGATTTGATTTTACCAAATCCTGGT
GAATCATTGATTGAAGCATGCAATACATGGCGTACAAAAGCTGATGGAAAAGTTGTTGCT
GATTATGCTCTTCGCTGTGCAATTACAAGCTGGAATAAATCCGTTAGCGATGAAATGAAA
ACGCTATGTGAAGAGTTTGGAATAAATTGCTTCGTTGTGTTTATGGCATTCAAAGATCAA
TATCAGTTGAGTGATTCCGATTTATATGAGATTTTTGAAAGATGCAATGAGCTTGGTGCA
TTATGTCAAGTGCATGCTGAGAATGGTGATATCATTGCGAAAAATGTTGAGAAACTTGTT
GCAAAAGGTCAAACAAGTGCAGAAGCACATGATCTCTCAAGAAGTGCAGAAGTTGAAGCG
GAAGCAGTTAATCGTGCATGTGTAATCGCTCATCAAACTGATTCACCAATTTATATCACC
AAAGTTTCTTCCAAATTGGCTGCCGATCAAATTCAACTTGCAAAACGCAG
>g10980.t10 Gene=g10980 Length=276
MDAPKPVKKIPIHVQSSQNRLYIKRARVVNHDSILTNVDIYIEDGTIKFIGSPADFVVPG
GVRVIDVAGKYVFPGGIDPNTQFESESNGFVSADTFYSGTKAAVAGGTTCIIDLILPNPG
ESLIEACNTWRTKADGKVVADYALRCAITSWNKSVSDEMKTLCEEFGINCFVVFMAFKDQ
YQLSDSDLYEIFERCNELGALCQVHAENGDIIAKNVEKLVAKGQTSAEAHDLSRSAEVEA
EAVNRACVIAHQTDSPIYITKVSSKLAADQIQLAKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10980.t10 | Gene3D | G3DSA:3.20.20.140 | - | 12 | 276 | 0 |
| 2 | g10980.t10 | PANTHER | PTHR11647 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER | 9 | 276 | 0 |
| 1 | g10980.t10 | Pfam | PF01979 | Amidohydrolase family | 71 | 253 | 0 |
| 4 | g10980.t10 | SUPERFAMILY | SSF51338 | Composite domain of metallo-dependent hydrolases | 20 | 83 | 0 |
| 3 | g10980.t10 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 75 | 275 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
