General information for g10981.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trithorax group protein osa.
Parent gene
- The parent gene g10981 is located on chr_1: 13148655..13150496 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10981 | g10981.t1 | isoform | g10981.t1 | 13122863 | 13148655 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon1 | 13122863 | 13125688 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS1 | 13122863 | 13125688 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon2 | 13125754 | 13125911 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS2 | 13125754 | 13125911 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon3 | 13125972 | 13126065 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS3 | 13125972 | 13126065 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon4 | 13126389 | 13126767 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS4 | 13126389 | 13126767 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon5 | 13126828 | 13126996 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS5 | 13126828 | 13126996 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon6 | 13127448 | 13127576 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS6 | 13127448 | 13127576 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon7 | 13128180 | 13128558 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS7 | 13128180 | 13128558 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon8 | 13128653 | 13128841 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS8 | 13128653 | 13128841 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon9 | 13128911 | 13129146 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS9 | 13128911 | 13129146 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon10 | 13129210 | 13130106 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS10 | 13129210 | 13130106 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon11 | 13132274 | 13132484 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS11 | 13132274 | 13132484 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon12 | 13138217 | 13138273 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS12 | 13138217 | 13138273 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon13 | 13142022 | 13142177 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS13 | 13142022 | 13142177 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon14 | 13142960 | 13143163 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS14 | 13142960 | 13143163 |
| chr_1 | g10981 | g10981.t1 | exon | g10981.t1.exon15 | 13147675 | 13148655 |
| chr_1 | g10981 | g10981.t1 | cds | g10981.t1.CDS15 | 13147675 | 13148655 |
| chr_1 | g10981 | g10981.t1 | TSS | g10981.t1 | NA | NA |
| chr_1 | g10981 | g10981.t1 | TTS | g10981.t1 | NA | NA |
Sequences
>g10981.t1 Gene=g10981 Length=7065
ATGGCATCACAACCATCTGAGCATTTACAAAATGATACTGGCAATCAAAGTTTAAAAGGA
AATGAATATCAACAGCAACAGCAGCAGCAAGAGATTTTGACTAAACTTCAGAATGGTGGA
CAAACGAATCCATCACCTCAAGTTCCAATTTCAGCTGCTAATGAACAACAACATGGAAAA
GGCATGAAATCTCCTCCAAGTAATGGAAATGGAAATAGTGGACATGGTGGACCAAATGAA
ATGATGCCAACAGGTCCAGGCTATCATCAAGATCCAAATTTAGGAGGAATGCCACCTGGA
CCACATCCTGGTCAGCAACATATGCAGCATCATCCAGAAAAAGACGAAATGCAACAACAA
CAGCCGCCTCATCATCAACAACATCCAATGTATGGTCATCAACCGATGCATCCAATGCAT
GCACCACAACAGCATATTCCTGGCCATCATTTGCCCATGCATCCGCATCAACAAAGATAT
CCTCATCATCCACATGCGCCACCAATGCAACATCCAATGCATCCGCATGATCCTAATCAG
CAGCAACAACAAATGGATCCTTATGCACATTATCGTGGTATGATGGGTCCACGACCGCCA
CAACATTATAGTATGCCTGGTCCAATGCCGAACAATACTCAAAATGTTCCGGCAAATGCT
GCAGGTGCACCACCACAGCAAGGACAAACACCAACACTCAATTCTTTACTTCAATCACAG
CCATCACCTCAAAATTCGCCTCAAAGTGCTCCACCACATCGATTTGGTCCCGGACCAAAT
GTTTATGATCCATACGGACCACCAACAAATGCAGCAGCTCAAAGTGGACCGCCGCAACCT
CCACCAAATAGCTCATCGCCTATGCCTCAATCTCAAGTTGCTCCACCACCACCACAGCAA
AATCAACAGAATCAACAAGGCTGGGCACCACCACCACGTCCATATAGTCCTCATCAATAT
CGTGGACCACCACCACCAACTGGAAATTCATCGAGAGGTCAATCTCCATATCCGCCACCA
TCGTCTGGCGTACAAAGCCCTGGGCCATATCCTGGAAATCAGCAGCAAGGAAATCAACCG
CCTGGTCCACCACAACAATATCAATATCCACAAAGATATCCAACTCCACCAGGATCCCAA
CAACAATCAATGGGTCCTCAAAATCATCGACCACCATACTCACAATGGCCATCGCCAGCC
GCCAGTCCTGGTCCACAACCTCCACCATCTCAATCACCAATTGCACCACCTCAAAGTCCT
GGACCGCAGCAGCAGCAACCACCAATGCAACATAGCGGCGCTCCAAGTCCGTCCTCTCAA
CAGCCTCAATCACCGCATCAGGTAAATCAAAAGAAAAAGAACAGCAGTGCAAAGAAGAAA
ACTAAGAAGCAGCAGAAGCAAGAAGCAGCTGCCGCAGCCGCTCAGAACAATTCCAATGAA
AACTCTTCCAATCTGGCAGTGACGAGTCAGCAACCGCAAGCACCACCATCACAGCCACCA
CCTTCAAATAATGCTAATGCTTCTCAACAGCCTGGCTCACAAATGAGGCCAATCTCATCT
CCAAATAGTTCATCATCTGGTTCTCGATCAATGTCTCCTGCTGTAGTCGGACAACAAAAT
CTACCGATGCCTCCACGACCTTCTAGCAGTCATTCACAAGGCATGCCACAACAGCAAGGG
AATCAAAGTCTCAACATTCCCAATTCATCGAATCCGCAAATGGAAGGCGGTCCACAAATG
CCTCAAAATATGCCACCACAAGGCTATGTTGGACCACCGCATCAACAATATGGACCTAAA
ATAGGTCCTTATCCGCCACAATCACAGTATTCACAAGGAAATTATTCGCCAAGATATCCG
GGATATCAACATCATCCGCCACCACCAAACAGTCCGGGTCAATATCGACCGCCAATGTCA
CAAAATCACGTGAACCCAGCAGGTCATCCTCAATACCCCTATCATCCTCAAGTTTGGCCG
CCACCGCCACAAAATCAAGCAAACAATCCTGGTGCAATGAGCAATCACATTCAAGGCAAA
AATATTGGTCCACCTCCTCCGCAATCACCAAGTCAGCAACAACAAGGACAGTCACAGAAT
CAACAACAAAATCAACCACAACAACCTGGACCAGTTGGTTCGCCTCGTCCTTTGAATTAT
TTAAAACAACATTTGCAACATAAAGGCGGTTATTCACAAGGTTCACCTCCACCGCAAACT
GGCAGTTATGGAAATGGACCAGGAATGCATCCAACAACAATGGGTCCACCTTCACATCAT
ATGGGTCCTCCAAGTGGAGCCATGGGTCCACCAGCAGCAGGCACTCCTCCGAGTCATATG
CAAGAAGGAAGTCAAATGGGAATGCCAAATATTCATCATCCTGAAGGTCAAGATAATGGC
ATGCCTCAAGGTGCACACACTGCAACATCACTTATCACAACAGGACCTGATGGTGTTGGT
TTAGATGAAGCCAGTCAACAAAGTACTCTTTCAAATACATCGATTGCCTCAGGTGAGGAT
CCACAATCGACACCCAAATCGCGTAAAACAAATGAAATGATGTATCCTGGACATCCGAGT
CAAGCAAATGTTTCGCCAAGCACGAGTAGTGGAATGCCACATAATGAAGAATTTGAAATG
GGCTCACCTCCTTGGCCAAGAACTCCAGCAAGTCCAGTGTTTAATAGTCATGCCCCGCCA
CCAGTATCAGCACAAGATTCGTTTAGAACATCGAAAGTAACGAAGTCTGATAGCTTAGCT
AAATTATATGAAATGGATGATAATCCAGAACGTAGAGGATTCCTTGATAAACTGTTAGGA
TATATGGATGAGATTAGAAAACCAGTGACTGCGTGTCCGCAAATTTCGAAGCAACCACTA
GATTTATATAGGCTGTACATATATGTTAAGGAACGGGGAGGTTTTATGGAGGTTACCAAA
AGTAAAACTTGGAAAGACGTTGCAGGTTTACTGGGAATTGGCGCAAGCAGTAGCGCTGCT
TATACATTAAGAAAACATTACATCAAAAGTATTTTGCCCTTTGAATGCCAATTTGATCGT
GGTGGCATCGATCCCGGACCGATTATTCAATCAGTAGAAGTCGGATCAAAGAAAAAGACA
CCAAAAGCGACTTCAGTGCCCTCACCGGGTTCGAGCAATTCACAAGATTCGTTTCCAGCA
CCGCCAAACAGCAGTCTCGATGCTTATTATGGCACAGCGCCTGGACAATATCCGCCACCG
CCTACTGGACAAGACTATGGTCAAGCGATGCCACGACCACCTTCTCAATCCAACACTCAA
CCAGGACCTGGTAATGCACCACAACCTACTAACGATAACATAAGTGTGAGCAATCCTTTT
GAAGATTCAGTTGCATCACGTCCCCCTTATCAACAGCAACAGCAGCAACACACTGGTGCT
CAATACCCTCGACCTCCAGGTCCATATCAAGGTCAATATCAACCGCCTTTCGGGCCAGTT
CCCGATCAACAACAGCCACCTTATGGACCACATAATGCTGGTCCAGGACCTAATCAGTAT
CCACCAACACAAAATCAATTTCCAAATAATCGTCAAATGTATCCATATGGTGCACCACCT
GAAGACTCTAATTTTAGAAATTCGGCGCCACAAAATGATGCTTATCGAGGTTATTCTCAT
TATCCACCACCACCCCCACAAAACATTGTCCCGAATAGTCAACAACAAGGACCGAGACCA
CCTTTTGGTCCACAAAATCAAAATCAAATTCAACCAACGCAACAGCCCTCAGTTTCAGCT
CCACCACAGGCTTCAGTTGCATCATCTGTTCCATCAGCGACTTCTGTTTCTCAACCACCG
CATGCTTCTCCATCTGCGGCACCACCATCATCTGTAAATAGCAACGCACCATCGAACCAA
AATCCATCACAAACTGGTCCACCACCACCAAATCAACCAAACTTTGGACCGCCAAATAAT
CAGCCAGATTATTACAATCGGCCAGAGAATGCACCTCCAAGAAGGCATCCTGATTTTGCA
AAAGATCCTAATCAACAACCTTATTCGCCTTATGGCGCACAACGTCCACAAATGGGTTAT
GGAGGCTGGCCACCAAATAATAGTGGACAACAATTTAGACAATATGCACCACAGGGACCT
CCAAATCAATGGCCTAATCAAGGTCCACCAAGGCCACAAGGTGCACCAAATCAATGGGAT
CAACAGAATAGATATCCAATAAATCAACAATATGGACCGAATCAACAATGGCAACAAAAT
GTAATGAGACCACCACAAAGAGGTGGAAAGCCTTTTCCAATGCCACCACCACCACAAGGA
CCACAGCAAATTAATAAAATGCCAAATCAATTTGGACCACATATGCACGGACATCCTATG
AATCAAGTTCATCCGATGCAAGGACCGATGCAGCCAAATCAGCAACCAGGAGGTCCTCAA
ATGAAGCGAGACATTGTATTTCCATCAGATGCAGTAGAAGCTACACAGCCACTGCTATAC
CGACGAAAACGAATGACAAAACATGATGTTAGTCCAGTTGATCCATGGAGAATATTCATG
TCACTTCGATCTGGTCTTTTGTCTGAGAGCACGTGGGCTCTTGATGTACTAAACGTTCTA
TTATTTGATGATTCAACTGTCGTCTATTTTGGCCTGACACACTTGCCGGGTCTGTTGAAT
CTTCTACTGGAACATTTCCAAAAAAGTCTTGCTGATACTTTTGATTCAAGCAGCAACAAC
AACAATAGCATCAGTTTATCAAGTGTGCCTGCTCTCAAAGACACGACAGAAAATGAAAAT
GTCGATGATGAAAATAATAAAAACGACGATGAATGTAACAAAAATACCGGTGGTGATAAT
AAGTTAATAAGTAGCAATTTAGTTAGTAATAGTAATAGTGATACTGGTGATACTAGGTGT
ATTAAGAAACAAATTCAAATGCCAGCGAATCGCGAAGAACAAGACTCTTCAGTTGATTTG
GGTTCAGTTACCGAAAACGACTTACCAAATCCAAATGAGCACATTGTGGTATTAAAATCA
TATAATTATACAATGCAATCGCGGAAGGGCGTTGCAGTAAAGCTACAGGACTCTAGCAAC
GATATTTTCATTATGGATAATCAACGTGTGTGGGATAAAGTTTGCAATCGTGATTATTTT
CTCAAAGCGACTGTTGGTGATGATCCATTCAGTGTGGGCAAAGAACCAAGCGACATCGAG
TATATTATGGACTGTTTCAAAGCCGAATTTGCGCACATTCCATTTGCACGATATATCAAG
AGTTCAAAAAGCGCCGAGACAATTGAGAAAGCGCGAAAAGTCACTGAGAACAAACCGAAG
CGAATGCGATTATCTTCAGAGGAAGAACGTGAAGTAGAAGAACTAACAAGAAAGCTTTAT
AAGGCACCAGTAAAACAAGCAACTGCCAATAATGTTGTATTTAAAAAAGAGACAGATGCT
GATGCAGATTGTCGACAAGTGGACATGGAAATTGAAAAAGTGCCCAATGGTCCAGTTAAT
TCTGACTCTGCATCTGATGCCGGAAGCGAAAAAGTGAAAACAGAAAGCACTGAAGAAAAT
ACTGAAAAGGACGAGGCAAAGACTGAATTTGATGTAAAAAGCACTGTTCGTGACTTTGCA
AAGTGCTTGAAACGAAGACGCATGAGTGATTATGAAGATGAATGTTATACACGAGATGAG
GCAAGTTTATATCTAATAAATGATAGTCAAGATGCTCTAGCACGTCGTTGCATCTGCCTC
TCGACCATTCTCAGGAATCTCACTTTCGTTCCCGGCAACGAACTCGAATTTTCACGCTCC
ACAACATTCCTTTCAATTCTCGGCAAGCTTCTGCTATTCCATCATGAACATCCAGTTCGA
ACGAAGAAACAAAGAAACTATGACCGTGAAGAAGATGCAGATTTCTCAGATTCATGTAGC
AGTCTTCAAGGAGAAAATGAATGGTGGTGGGACTTTTTAGTGCAAATACGTGAAAATATG
CTAGTTGCATTGACAAATATCTCAGGTCATTTAGATCTGTCGTCATTCGATGAGCCAATT
TCGCGACCTATTCTCGATGGTCTCTTGCATTGGGCTGTATGTCCATCAGCACATGGACAA
GATCCATTCACGACTCTCACAAATAACTCACCAATCAGTCCACAACGACTGGCACTAGAA
GCTCTCTGTAAATTGTGTGTAACTGACTCAAATGTTGATTTGGTGATATCAACACCACCA
TTTTCGAGGCTAGAAAAATTATGTGCGGTACTGACCAAACATTTGTGCAAAAATGAGGAT
CAAGTGCTTCGGGAATTTTCTGTAAATCTTTTACATTATCTGGCAAGTGCCGACAGTGTT
ATGGCTCGAATTATTGCTAGACAAAGTCCATGTGTTTCGTACCTTGTAGCGTTTATTGAG
CAAGCAGAACAAACAGCTTTAGGCGTTGCTAATCAACATGGCATCAATTTCTTACGTGAA
AATCCGGACTCAATGGGAACGAGCTTGGATATGTTAAGAAGAGCAGCAGGAACATTGCTT
CATTTAGCAAAACATCCCGATAATCGACCATTGTTTATGCAACAAGAACAAAGACTATTA
GGTCTTGTGATGAGTCACATTTTAGATCAACAAGTTGCTCTCATAATTTCACGTGTACTT
TTTCAAACTTCACGTGGCAGTGGTCCATTAACAACAACACAACAGAATGAACAACAAAAT
GATGAACAGCCACAAAAGATTCTTCCAGAAAGTCAAAAAAGCTCTGCAAATATATCTCAA
ATTGCTAGCTTTGAACATAGTCAAAAAGCACCGGCAATAGTTCACAATTCAACAATAAAC
AATCCTCACATACAACCACAAAATTTTCCACCTTTCATGAAATCGCCTCAACCTCCATTT
CTCTCCACTCCGACTAAGCTTTTAAATAGCACTGATGACGGAATGAAAGCGAAACTCAAT
ACGATCAATAAGCAAATTACTGCAAATGCATCAAACATCCCAACAGCTCAGTCACCATCG
GCACCAACACCTTCGATTCCGCAAACAGTTACAGCTTCATCTTAG
>g10981.t1 Gene=g10981 Length=2354
MASQPSEHLQNDTGNQSLKGNEYQQQQQQQEILTKLQNGGQTNPSPQVPISAANEQQHGK
GMKSPPSNGNGNSGHGGPNEMMPTGPGYHQDPNLGGMPPGPHPGQQHMQHHPEKDEMQQQ
QPPHHQQHPMYGHQPMHPMHAPQQHIPGHHLPMHPHQQRYPHHPHAPPMQHPMHPHDPNQ
QQQQMDPYAHYRGMMGPRPPQHYSMPGPMPNNTQNVPANAAGAPPQQGQTPTLNSLLQSQ
PSPQNSPQSAPPHRFGPGPNVYDPYGPPTNAAAQSGPPQPPPNSSSPMPQSQVAPPPPQQ
NQQNQQGWAPPPRPYSPHQYRGPPPPTGNSSRGQSPYPPPSSGVQSPGPYPGNQQQGNQP
PGPPQQYQYPQRYPTPPGSQQQSMGPQNHRPPYSQWPSPAASPGPQPPPSQSPIAPPQSP
GPQQQQPPMQHSGAPSPSSQQPQSPHQVNQKKKNSSAKKKTKKQQKQEAAAAAAQNNSNE
NSSNLAVTSQQPQAPPSQPPPSNNANASQQPGSQMRPISSPNSSSSGSRSMSPAVVGQQN
LPMPPRPSSSHSQGMPQQQGNQSLNIPNSSNPQMEGGPQMPQNMPPQGYVGPPHQQYGPK
IGPYPPQSQYSQGNYSPRYPGYQHHPPPPNSPGQYRPPMSQNHVNPAGHPQYPYHPQVWP
PPPQNQANNPGAMSNHIQGKNIGPPPPQSPSQQQQGQSQNQQQNQPQQPGPVGSPRPLNY
LKQHLQHKGGYSQGSPPPQTGSYGNGPGMHPTTMGPPSHHMGPPSGAMGPPAAGTPPSHM
QEGSQMGMPNIHHPEGQDNGMPQGAHTATSLITTGPDGVGLDEASQQSTLSNTSIASGED
PQSTPKSRKTNEMMYPGHPSQANVSPSTSSGMPHNEEFEMGSPPWPRTPASPVFNSHAPP
PVSAQDSFRTSKVTKSDSLAKLYEMDDNPERRGFLDKLLGYMDEIRKPVTACPQISKQPL
DLYRLYIYVKERGGFMEVTKSKTWKDVAGLLGIGASSSAAYTLRKHYIKSILPFECQFDR
GGIDPGPIIQSVEVGSKKKTPKATSVPSPGSSNSQDSFPAPPNSSLDAYYGTAPGQYPPP
PTGQDYGQAMPRPPSQSNTQPGPGNAPQPTNDNISVSNPFEDSVASRPPYQQQQQQHTGA
QYPRPPGPYQGQYQPPFGPVPDQQQPPYGPHNAGPGPNQYPPTQNQFPNNRQMYPYGAPP
EDSNFRNSAPQNDAYRGYSHYPPPPPQNIVPNSQQQGPRPPFGPQNQNQIQPTQQPSVSA
PPQASVASSVPSATSVSQPPHASPSAAPPSSVNSNAPSNQNPSQTGPPPPNQPNFGPPNN
QPDYYNRPENAPPRRHPDFAKDPNQQPYSPYGAQRPQMGYGGWPPNNSGQQFRQYAPQGP
PNQWPNQGPPRPQGAPNQWDQQNRYPINQQYGPNQQWQQNVMRPPQRGGKPFPMPPPPQG
PQQINKMPNQFGPHMHGHPMNQVHPMQGPMQPNQQPGGPQMKRDIVFPSDAVEATQPLLY
RRKRMTKHDVSPVDPWRIFMSLRSGLLSESTWALDVLNVLLFDDSTVVYFGLTHLPGLLN
LLLEHFQKSLADTFDSSSNNNNSISLSSVPALKDTTENENVDDENNKNDDECNKNTGGDN
KLISSNLVSNSNSDTGDTRCIKKQIQMPANREEQDSSVDLGSVTENDLPNPNEHIVVLKS
YNYTMQSRKGVAVKLQDSSNDIFIMDNQRVWDKVCNRDYFLKATVGDDPFSVGKEPSDIE
YIMDCFKAEFAHIPFARYIKSSKSAETIEKARKVTENKPKRMRLSSEEEREVEELTRKLY
KAPVKQATANNVVFKKETDADADCRQVDMEIEKVPNGPVNSDSASDAGSEKVKTESTEEN
TEKDEAKTEFDVKSTVRDFAKCLKRRRMSDYEDECYTRDEASLYLINDSQDALARRCICL
STILRNLTFVPGNELEFSRSTTFLSILGKLLLFHHEHPVRTKKQRNYDREEDADFSDSCS
SLQGENEWWWDFLVQIRENMLVALTNISGHLDLSSFDEPISRPILDGLLHWAVCPSAHGQ
DPFTTLTNNSPISPQRLALEALCKLCVTDSNVDLVISTPPFSRLEKLCAVLTKHLCKNED
QVLREFSVNLLHYLASADSVMARIIARQSPCVSYLVAFIEQAEQTALGVANQHGINFLRE
NPDSMGTSLDMLRRAAGTLLHLAKHPDNRPLFMQQEQRLLGLVMSHILDQQVALIISRVL
FQTSRGSGPLTTTQQNEQQNDEQPQKILPESQKSSANISQIASFEHSQKAPAIVHNSTIN
NPHIQPQNFPPFMKSPQPPFLSTPTKLLNSTDDGMKAKLNTINKQITANASNIPTAQSPS
APTPSIPQTVTASS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10981.t1 | CDD | cd16865 | ARID_ARID1A-like | 929 | 1021 | 3.29622E-54 |
| 11 | g10981.t1 | Coils | Coil | Coil | 457 | 477 | - |
| 9 | g10981.t1 | Gene3D | G3DSA:1.10.150.60 | - | 911 | 1031 | 2.4E-42 |
| 10 | g10981.t1 | Gene3D | G3DSA:1.25.10.10 | - | 1975 | 2227 | 8.7E-7 |
| 28 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 130 | - |
| 35 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - |
| 17 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 121 | - |
| 33 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 244 | - |
| 44 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 740 | - |
| 42 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 264 | - |
| 24 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 296 | - |
| 26 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 333 | - |
| 15 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 371 | - |
| 27 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 391 | - |
| 41 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 424 | - |
| 19 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 451 | - |
| 29 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 492 | - |
| 21 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 580 | - |
| 47 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 635 | - |
| 38 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 667 | - |
| 34 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 709 | - |
| 20 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 740 | - |
| 48 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 758 | 784 | - |
| 25 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 883 | - |
| 37 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 875 | - |
| 43 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1062 | - |
| 51 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1037 | 1062 | - |
| 39 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1107 | - |
| 49 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1107 | - |
| 22 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1402 | - |
| 52 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1141 | - |
| 45 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1177 | - |
| 18 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1178 | 1192 | - |
| 23 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1232 | 1301 | - |
| 50 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1302 | 1317 | - |
| 46 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1361 | 1381 | - |
| 31 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1585 | 1639 | - |
| 36 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1596 | 1616 | - |
| 16 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1617 | 1639 | - |
| 32 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1830 | 1867 | - |
| 40 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1848 | 1867 | - |
| 30 | g10981.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2330 | 2354 | - |
| 4 | g10981.t1 | PANTHER | PTHR12656:SF5 | TRITHORAX GROUP PROTEIN OSA | 667 | 1242 | 0.0 |
| 6 | g10981.t1 | PANTHER | PTHR12656 | BRG-1 ASSOCIATED FACTOR 250 BAF250 | 667 | 1242 | 0.0 |
| 3 | g10981.t1 | PANTHER | PTHR12656:SF5 | TRITHORAX GROUP PROTEIN OSA | 1209 | 2233 | 0.0 |
| 5 | g10981.t1 | PANTHER | PTHR12656 | BRG-1 ASSOCIATED FACTOR 250 BAF250 | 1209 | 2233 | 0.0 |
| 2 | g10981.t1 | Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 931 | 1015 | 2.2E-15 |
| 1 | g10981.t1 | Pfam | PF12031 | SWI/SNF-like complex subunit BAF250/Osa | 1913 | 2172 | 3.6E-118 |
| 53 | g10981.t1 | ProSiteProfiles | PS51011 | ARID domain profile. | 928 | 1019 | 27.176 |
| 14 | g10981.t1 | SMART | SM01014 | ARID_2 | 925 | 1015 | 3.2E-32 |
| 13 | g10981.t1 | SMART | SM00501 | bright_3 | 929 | 1020 | 2.2E-36 |
| 8 | g10981.t1 | SUPERFAMILY | SSF46774 | ARID-like | 915 | 1025 | 1.31E-29 |
| 7 | g10981.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 1996 | 2196 | 1.41E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0006338 | chromatin remodeling | BP |
| GO:0016514 | SWI/SNF complex | CC |
| GO:0035060 | brahma complex | CC |
KEGG
Orthology
- This transcript has been annotated with K11653 (AT-rich interactive domain-containing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
