General information for g11010.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11010 is located on chr_1: 13391425..13393083 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11010 | g11010.t1 | isoform | g11010.t1 | 13391425 | 13393083 |
| chr_1 | g11010 | g11010.t1 | exon | g11010.t1.exon1 | 13391425 | 13393083 |
| chr_1 | g11010 | g11010.t1 | cds | g11010.t1.CDS1 | 13391425 | 13393083 |
| chr_1 | g11010 | g11010.t1 | TSS | g11010.t1 | NA | NA |
| chr_1 | g11010 | g11010.t1 | TTS | g11010.t1 | NA | NA |
Sequences
>g11010.t1 Gene=g11010 Length=1659
ATGAGCATTAACAACTTTTCATTTGAATCAAATTTGATTACAAAAAATCTATTGCAGTCA
AAAATAAGAATTAACGTATATGAAAGCAAACATGATTTAAGAAATCCAATGGTGAGGAGA
AAATATGCGAGCTCTCGAATAGAAAGACTTGCAAAACCGAATGTCAGAAGAATTAAAAGC
ATCTTCGATAAACAAAAGAAAAAGTCAAATTTTGATATGAAAAAAGCAGAAACTTTCATA
AAACTTTTGCAAAAAGAATCGAATTCATCATGTGAGGTTGAGAATTTACCAAGAGTGAGA
TATACAAAGATGAGTAAAAAATGCAATAGATGTTTATGCAATTGTTACGAGAAATCTAAA
AGATCAAAAATTGTATTGCGAAACGGTATTGAATTTTTAGATACATCTAAAATATTATAT
TTAACAAAGACATTTTCAGAGTTTATGAAAAATAAAAATGCAAAAGAAAATTCATCAAAT
AAAGAAGAGAAAACTATTGAAAGTCAACATCTTTTAGAGGAAGAGAAAATAAAAAAGATT
GTTGATTTTTCGCTACCTGTTGATATTAAAAACTCAATGCCTTCACAAAGAAATAAAAAA
CTTCGCATACGACGTCAAACTGGCTTTGTCAATCAAAACAATAGTGATGAAGAAATGATA
AGCATACCACGTGGAAGAAGACCAACAGGATTTATTCATGAGCTGAATAATCCAAATGAA
AATTTGAACAATCAAGAAACACCTTATTTATTTGAACAACAAGAAGAAGCAGAAGAACAT
GATCCTATCTTGATGCAAGCAAGAAATTTTTTAAATGATAGTGACCCACAAATTTTAACA
AGTACACAAAATGAGGAAAAGTTGTCACAGAATTATGCTAATGTTTTCATTGTGAATGGA
ATCGATCGAATTATGTCAAAAACAGAAGATAAAATTTACTCGAAATTAAATGAATCAATT
ACAACAAATTCAAAAATTTTCAACAATTCTAAAATAGTAAAATCAAATCAAATTGAGGAG
AAAAGTAATAAATCATTTATGACAGATGATGGATTATCATCACATTTGTTAAATGCGATA
ATGTCATCTCCGAGTGAATGGCGAATTACATCTATAAATACAGAAAATCTTGAATTCACT
ATAAAAACACCTAAATTAAAAGCAATAGAAAATTCAACTGATCAACAGAATCAAAAAGCA
ACTTCAAAGCCAATTTCTACTGTATTTGCAACTCGAGAATACGACGATTATGAAAAAATT
GATGCAAATGAAGAAAAGCTCATACATGTGACTAATGACAATATTGATAAAGTGTTCATT
GTTAGAGAACTCGAAAATGAAGATGCTGTGAAAAGATTTTGCAAATGTTCAAGAGCACGC
AAATCGAGGCTTTTTCAAGCAATTGCAAAAAATCCAATCGAGATAAGACGTCTTCCATTA
AAGCATTTGAAGAAATATTGCGGAAAAGATCATGTTACAGATCTTAAAGATGTCGAGAAA
TTTTATTTAGCTGATGTACGAAAAGAAAATTTTAAAATTCAACGCTTAAGTGAAATTAAT
AACGCAAAAGCTCAGTCAACATTTAAGAAGATAGACATTGAAGTTAAGGAAAGTTTCACA
AACGATTCAAAATTCACTGTTTCAAAGAAAGACACGTGA
>g11010.t1 Gene=g11010 Length=552
MSINNFSFESNLITKNLLQSKIRINVYESKHDLRNPMVRRKYASSRIERLAKPNVRRIKS
IFDKQKKKSNFDMKKAETFIKLLQKESNSSCEVENLPRVRYTKMSKKCNRCLCNCYEKSK
RSKIVLRNGIEFLDTSKILYLTKTFSEFMKNKNAKENSSNKEEKTIESQHLLEEEKIKKI
VDFSLPVDIKNSMPSQRNKKLRIRRQTGFVNQNNSDEEMISIPRGRRPTGFIHELNNPNE
NLNNQETPYLFEQQEEAEEHDPILMQARNFLNDSDPQILTSTQNEEKLSQNYANVFIVNG
IDRIMSKTEDKIYSKLNESITTNSKIFNNSKIVKSNQIEEKSNKSFMTDDGLSSHLLNAI
MSSPSEWRITSINTENLEFTIKTPKLKAIENSTDQQNQKATSKPISTVFATREYDDYEKI
DANEEKLIHVTNDNIDKVFIVRELENEDAVKRFCKCSRARKSRLFQAIAKNPIEIRRLPL
KHLKKYCGKDHVTDLKDVEKFYLADVRKENFKIQRLSEINNAKAQSTFKKIDIEVKESFT
NDSKFTVSKKDT
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
