General information for g11011.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11011 is located on chr_1: 13393959..13395233 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11011 | g11011.t3 | TTS | g11011.t3 | 13393136 | 13393136 |
| chr_1 | g11011 | g11011.t3 | isoform | g11011.t3 | 13393411 | 13393959 |
| chr_1 | g11011 | g11011.t3 | exon | g11011.t3.exon1 | 13393411 | 13393518 |
| chr_1 | g11011 | g11011.t3 | cds | g11011.t3.CDS1 | 13393411 | 13393470 |
| chr_1 | g11011 | g11011.t3 | exon | g11011.t3.exon2 | 13393581 | 13393752 |
| chr_1 | g11011 | g11011.t3 | exon | g11011.t3.exon3 | 13393809 | 13393890 |
| chr_1 | g11011 | g11011.t3 | exon | g11011.t3.exon4 | 13393953 | 13393959 |
| chr_1 | g11011 | g11011.t3 | TSS | g11011.t3 | 13394341 | 13394341 |
Sequences
>g11011.t3 Gene=g11011 Length=369
GCTAAAAATCCTTTAAAATTAAGTCGGCAAGTTGATGGAACTGCAGGTGATACTTCAGAT
GAAGACGGTAGCGATATAAGTGACGATCATTATGATGATATAGATGATGATGACTTGAAT
CGAGATGATGATGGATCAGACATAAATGACGCTGATGGTGGAGCAGAAGAAGAACCATTA
AACTCTGAAGATGATGTGACAGATGAAGATGCTGCTGATCTGTTTGAAACAGATAATGTT
GTTGTATGTCAATATGATAAGATCAATCGTTCACGTAATAAATGGAAATTTTATCTAAAG
GATGGAATTATGAATCTTAATGGAAAAGATTATGTTTTTTCAAAATCAAATGGTGATGCT
GAATGGTGA
>g11011.t3 Gene=g11011 Length=19
MNLNGKDYVFSKSNGDAEW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11011.t3 | Gene3D | G3DSA:2.30.18.10 | Transcription factor IIA (TFIIA) | 1 | 19 | 1.00e-07 |
| 1 | g11011.t3 | SUPERFAMILY | SSF50784 | Transcription factor IIA (TFIIA), beta-barrel domain | 1 | 19 | 1.46e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005672 | transcription factor TFIIA complex | CC |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
