Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 313a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11037 g11037.t1 TTS g11037.t1 13619813 13619813
chr_1 g11037 g11037.t1 isoform g11037.t1 13619881 13622626
chr_1 g11037 g11037.t1 exon g11037.t1.exon1 13619881 13620802
chr_1 g11037 g11037.t1 cds g11037.t1.CDS1 13619881 13620802
chr_1 g11037 g11037.t1 exon g11037.t1.exon2 13620861 13621119
chr_1 g11037 g11037.t1 cds g11037.t1.CDS2 13620861 13621119
chr_1 g11037 g11037.t1 exon g11037.t1.exon3 13622201 13622398
chr_1 g11037 g11037.t1 cds g11037.t1.CDS3 13622201 13622398
chr_1 g11037 g11037.t1 exon g11037.t1.exon4 13622470 13622626
chr_1 g11037 g11037.t1 cds g11037.t1.CDS4 13622470 13622626
chr_1 g11037 g11037.t1 TSS g11037.t1 NA NA

Sequences

>g11037.t1 Gene=g11037 Length=1536
ATGCTTTTGCTGATTTGTTCAATTCTATTGACAATTTGTATTATAAAATGGATGTATCGA
GACAAAACATTATACGCATTTGCTGATCAAATTCCTGGACCAAAAGCTTTTCCCATAATT
GGCAGTTCACATAAAATACTTAAAAAGAGCGAAGAAGACAGATTCAAAATCGTTCAAGAT
ATGTTGGCAAAATATGAAACTAATGAAATGACACGATTTTGGCTTGGACCAGTATTATTT
ATATTCATAAATGAGCCAAAACTTATTCAACAAGTGCTCAATTCAAATGACTGCCTCGAG
AAATCATTCAACTATAAATTTTTGAGATTGGACAAAGGGCTTCTTGCTGCCAAACGTGAA
ACTTGGGTTGATCATAGAAAATTCCTTGAAGATTCATTCAGATTGGATGTCATAAAAAGT
TTCATCTCTATATTTGTTGACAGTTCGAATCAGCTTGTAGCATCATTAAGTCAAACTAAA
GAGCAGGATGAAACCAAAATTGATATTTTCAAATTAGTTTCAAGGTCCTCACTAACTATG
GTTCTTGCTACCTCATTTGGCATCAACGCATCAGAAGTTCATTTTGATGATGAAATTTTG
AAGGCTGTTGAAGAGCTTATAAAAATAATTTCGCTTAGATGTCATGAGCCGGTTTTATAC
TTTGAGCCAATATATCGCATGACACGAAATTACTACAGAGAGAAAAAATACCGCAAACGT
ACTACATACTATCTCGACCAAGTGCTCAAAGAACGTCGCGAGTTAATTTCACCAAATAAT
AATCTTACAACTGCTTCATCAGTCGCTACAATGAGAACAGATATCACAAAAGATGAAGAG
ATGGGAATAACAGTGCAAGAAATACCAAATATATCGCTCAACAGTCACAGCTTTATTGAC
CACATGGTGATGCAGAGCGGAGCATTTAATGATGAAGAAATTCACGATCACATCTACACT
TTCGTTGCTGCCGGTTATGAAACTGTTGCATTGCAGACATTTTTCACACTGTTGCTGCTT
GCTATACACACTGACATGCAAGAGCGAGTTCACTGTGAAGTAGTTAATGTTGGTGACATT
AATTGTGAGTCACTCGACAAGCTCAATTACCTTGACCGAGTCATTAAAGAGTCTATGCGA
CTACTACCGAGTGTGCCAATTGTGGGGCGTGAAACTCGCGAGGAAGTCGTGATTGGTGAT
AAGAAAATTCCAAAAGGCATCACTTTGCTTATTCATTTATTTAATTTGCATCGAAGGAAG
GATATATGGGGCGATGATGCACATGAGTTTAATCCAGATAGATTTCTACCTGAAAATGTT
GCTCAAAGACATTCACACAGCTTCTTGCCTTTTTCTGAAGGTTTAAGGGATTGTATTGGG
AAAGTTTATGCTATGTATGCAATTAAAACTATGCTAGTGACAATTTTGAGAAAATTTAAA
GTCTCAACAGATTTAAAATTTGGAGAACTTAGTTATAAGGCTGATATTACACTAAAAATA
TGTCAGAATACAAAGATAAAAATTGAAAAAAGATAA

>g11037.t1 Gene=g11037 Length=511
MLLLICSILLTICIIKWMYRDKTLYAFADQIPGPKAFPIIGSSHKILKKSEEDRFKIVQD
MLAKYETNEMTRFWLGPVLFIFINEPKLIQQVLNSNDCLEKSFNYKFLRLDKGLLAAKRE
TWVDHRKFLEDSFRLDVIKSFISIFVDSSNQLVASLSQTKEQDETKIDIFKLVSRSSLTM
VLATSFGINASEVHFDDEILKAVEELIKIISLRCHEPVLYFEPIYRMTRNYYREKKYRKR
TTYYLDQVLKERRELISPNNNLTTASSVATMRTDITKDEEMGITVQEIPNISLNSHSFID
HMVMQSGAFNDEEIHDHIYTFVAAGYETVALQTFFTLLLLAIHTDMQERVHCEVVNVGDI
NCESLDKLNYLDRVIKESMRLLPSVPIVGRETREEVVIGDKKIPKGITLLIHLFNLHRRK
DIWGDDAHEFNPDRFLPENVAQRHSHSFLPFSEGLRDCIGKVYAMYAIKTMLVTILRKFK
VSTDLKFGELSYKADITLKICQNTKIKIEKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g11037.t1 PANTHER PTHR24291:SF105 CYTOCHROME P450 4P1-RELATED 4 511 4.1E-88
3 g11037.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 4 511 4.1E-88
5 g11037.t1 PRINTS PR00385 P450 superfamily signature 324 341 1.6E-7
9 g11037.t1 PRINTS PR00465 E-class P450 group IV signature 368 384 4.0E-11
4 g11037.t1 PRINTS PR00385 P450 superfamily signature 373 384 1.6E-7
8 g11037.t1 PRINTS PR00465 E-class P450 group IV signature 418 436 4.0E-11
11 g11037.t1 PRINTS PR00465 E-class P450 group IV signature 442 458 4.0E-11
6 g11037.t1 PRINTS PR00385 P450 superfamily signature 449 458 1.6E-7
7 g11037.t1 PRINTS PR00385 P450 superfamily signature 458 469 1.6E-7
10 g11037.t1 PRINTS PR00465 E-class P450 group IV signature 458 476 4.0E-11
1 g11037.t1 Pfam PF00067 Cytochrome P450 32 483 2.2E-78
16 g11037.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 13 -
17 g11037.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
18 g11037.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 9 -
19 g11037.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 10 13 -
15 g11037.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 14 511 -
13 g11037.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 451 460 -
12 g11037.t1 SUPERFAMILY SSF48264 Cytochrome P450 31 511 6.55E-92
14 g11037.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed