General information for g11042.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11042 is located on chr_1: 13645193..13646148 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11042 | g11042.t1 | isoform | g11042.t1 | 13645193 | 13646148 |
| chr_1 | g11042 | g11042.t1 | exon | g11042.t1.exon1 | 13645193 | 13645272 |
| chr_1 | g11042 | g11042.t1 | cds | g11042.t1.CDS1 | 13645193 | 13645272 |
| chr_1 | g11042 | g11042.t1 | exon | g11042.t1.exon2 | 13645406 | 13645594 |
| chr_1 | g11042 | g11042.t1 | cds | g11042.t1.CDS2 | 13645406 | 13645594 |
| chr_1 | g11042 | g11042.t1 | exon | g11042.t1.exon3 | 13645887 | 13646148 |
| chr_1 | g11042 | g11042.t1 | cds | g11042.t1.CDS3 | 13645887 | 13646148 |
| chr_1 | g11042 | g11042.t1 | TSS | g11042.t1 | 13646408 | 13646408 |
| chr_1 | g11042 | g11042.t1 | TTS | g11042.t1 | NA | NA |
Sequences
>g11042.t1 Gene=g11042 Length=531
ATGCCATCACCAAAATCTTTCGGTTTTCTTGGTCATGCTCCATATTTTCTTGGTAAAGAT
GAAGAAGGACGTCTTGCGATGCTGCATGAACTTTGTTTGGAACAGAAAACATATACAAAA
CTTTGGCTAGGACCAGCAATTATGTGGATTTTAGCAAATGATCCAAAAACAATTCAGAAA
ATTCTACTCTCGCCAGTTTGTCTCGAGAAGCCATTTTTCTACAAATTTCTTCGTCTCGAT
AATGGATTAATTTCTGCTAGATATGATGTTTGGAAAATTCATCGAAAATCACTCAATTAT
TCTTTCAATCTCAAAATTCTTCAAACATTTATTCCAATTTTTATCGAAAACTCACAAAAA
CTTGTCAACGATTTGGCTGTGAACATTGGCAAGAAGAAGGAATTTGATTTACTTCACTAT
TCAACAAAGACTGCTCTTAATATGATTTGCGGCACATCATTCGGCTTGGATATAAAAAAT
GTAGACACAACAGTACTAGGTGATGATGTTTTCAATGCTTTAGAGAAGTGA
>g11042.t1 Gene=g11042 Length=176
MPSPKSFGFLGHAPYFLGKDEEGRLAMLHELCLEQKTYTKLWLGPAIMWILANDPKTIQK
ILLSPVCLEKPFFYKFLRLDNGLISARYDVWKIHRKSLNYSFNLKILQTFIPIFIENSQK
LVNDLAVNIGKKKEFDLLHYSTKTALNMICGTSFGLDIKNVDTTVLGDDVFNALEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11042.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 175 | 0 |
| 2 | g11042.t1 | PANTHER | PTHR24291:SF106 | CYTOCHROME P450 4G1-RELATED | 1 | 160 | 0 |
| 3 | g11042.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 1 | 160 | 0 |
| 1 | g11042.t1 | Pfam | PF00067 | Cytochrome P450 | 28 | 160 | 0 |
| 4 | g11042.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 163 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed