General information for g11061.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11061 is located on chr_1: 13739132..13741509 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11061 | g11061.t11 | isoform | g11061.t11 | 13738203 | 13739132 |
| chr_1 | g11061 | g11061.t11 | exon | g11061.t11.exon1 | 13738203 | 13738386 |
| chr_1 | g11061 | g11061.t11 | cds | g11061.t11.CDS1 | 13738203 | 13738386 |
| chr_1 | g11061 | g11061.t11 | exon | g11061.t11.exon2 | 13738446 | 13738611 |
| chr_1 | g11061 | g11061.t11 | cds | g11061.t11.CDS2 | 13738446 | 13738611 |
| chr_1 | g11061 | g11061.t11 | exon | g11061.t11.exon3 | 13738673 | 13738797 |
| chr_1 | g11061 | g11061.t11 | cds | g11061.t11.CDS3 | 13738673 | 13738797 |
| chr_1 | g11061 | g11061.t11 | exon | g11061.t11.exon4 | 13739002 | 13739132 |
| chr_1 | g11061 | g11061.t11 | cds | g11061.t11.CDS4 | 13739002 | 13739132 |
| chr_1 | g11061 | g11061.t11 | TTS | g11061.t11 | 13739293 | 13739293 |
| chr_1 | g11061 | g11061.t11 | TSS | g11061.t11 | NA | NA |
Sequences
>g11061.t11 Gene=g11061 Length=606
GTTGAACGTGCAAGAACAGTTAAAGGATGGTTACCTCGAAGACTTGGAGGTGGTTTAGGT
GGAACAAGACGTGGTGGTGCTGAGGTAAATATTAAGCACAGTGGACGAGAAGATAATGTA
CGTGAAAAGGAGAGATATCGTCTTGAAAGAGAAAGAGAAGATAATCGTCGTCTTGATGAT
AGAAGATTTGATAGAAGACGATCTCGATCACATGAAAAAAGTCGTGAAAGAAGACGATCT
CGATCGAAAGAACGTAGAAGACATAGGTCGCGTGAAGAAGATTATGAAAGACATGATAGA
AGAGAAAAATCGCGTGAGAAGAAACGCCGAAGAACACGTTCTAGAGATCGAGATCGTTCT
GAACGTAAACGCGATAAACGTGATCGTTCTAGATCACGTGAAAGACGCCGTGATAAGGAC
AAGAAAGAGCGTAAACCAGAGTTCGATATTAAAATTAAGGAAGAACCCATTGATGATTAT
CCGGACTACACGCAACATGATTATGGTCAATATGCCAATCAAGTTAAGTATGAATCAGGT
GATGAAGAAAAATATAGACCAAATGAGCAAGATGGAGCCGCTTATGGTTATCGACAAGAT
TATTAA
>g11061.t11 Gene=g11061 Length=201
VERARTVKGWLPRRLGGGLGGTRRGGAEVNIKHSGREDNVREKERYRLEREREDNRRLDD
RRFDRRRSRSHEKSRERRRSRSKERRRHRSREEDYERHDRREKSREKKRRRTRSRDRDRS
ERKRDKRDRSRSRERRRDKDKKERKPEFDIKIKEEPIDDYPDYTQHDYGQYANQVKYESG
DEEKYRPNEQDGAAYGYRQDY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g11061.t11 | Coils | Coil | Coil | 41 | 61 | - |
| 3 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 163 | - |
| 4 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 70 | - |
| 8 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 86 | - |
| 9 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - |
| 5 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 117 | - |
| 7 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 162 | - |
| 6 | g11061.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 201 | - |
| 1 | g11061.t11 | PANTHER | PTHR13952:SF22 | - | 1 | 146 | 7.3E-13 |
| 2 | g11061.t11 | PANTHER | PTHR13952 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | 1 | 146 | 7.3E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
