General information for g11123.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DnaJ homolog subfamily B member 12.
Parent gene
- The parent gene g11123 is located on chr_1: 14280770..14281356 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11123 | g11123.t1 | TSS | g11123.t1 | 14279758 | 14279758 |
| chr_1 | g11123 | g11123.t1 | isoform | g11123.t1 | 14279816 | 14281356 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon1 | 14279816 | 14280144 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS1 | 14279816 | 14280144 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon2 | 14280242 | 14280329 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS2 | 14280242 | 14280329 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon3 | 14280390 | 14280704 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS3 | 14280390 | 14280704 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon4 | 14280770 | 14280873 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS4 | 14280770 | 14280873 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon5 | 14280930 | 14281093 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS5 | 14280930 | 14281093 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon6 | 14281168 | 14281264 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS6 | 14281168 | 14281264 |
| chr_1 | g11123 | g11123.t1 | exon | g11123.t1.exon7 | 14281326 | 14281356 |
| chr_1 | g11123 | g11123.t1 | cds | g11123.t1.CDS7 | 14281326 | 14281356 |
| chr_1 | g11123 | g11123.t1 | TTS | g11123.t1 | 14282289 | 14282289 |
Sequences
>g11123.t1 Gene=g11123 Length=1128
ATGACGATAATTGAGGGAAATATAGATGCAAGTGAGCAATGTGTTGATTTAGCAAGTAAA
GAAATATCAAATGGAAACTTAGAAAAAGCAGAAAAACTGCTTTTAAAGGCGCTAAAATTA
TATCCAACAAATCGCAAGGCAGAGTTAATTTTAGAGAAATTAAAAGCTGGACGATTCAAC
ACTAAAACATCAAATGGTAGTACTACAACTGGCAACAACGATGGAATTCATCAAAGAAGA
CGGCCAACTACTGCACCAAAAGCAGATGAGCCTAAATTAGGTGAAGATTACACTCAAGAG
CAATTGGAGATTGTTCAGAAAATTAAAAAATGTAAAGATTATTATGAAGTTTTGGGCTGC
AATAAAGAGTCAACGGACTCAGAGATAAAGAAAGCGTATAAAAAATTGGCCTTGCAGCTT
CATCCTGATAAAAATAAGGCACCAGGTTCAGCTGAAGCATTCAAAGCCATTGGAAATGCT
GTTGCAGTTCTCACTGACGCCGAAAAAAGAAAATCATATGACTTGTATGGCAAGGATGAA
ACAAACTTGAGACGATCAAGCAGTTTCAACAACTATAGTGGATTCAGGAATCATGAATAT
GCATATGCTCGTGGATTTGAATCTGAATTTACTGCTGAAGAACTCTTTAATATGTTTTTT
GGAGGTGGATTTCCTCAACAAGCAACACAAGCTCGTTATCGTCGCTATCAACATCATCAT
GAGGCTCAAACTGGACAATCAAGTCTTGCTTTCGGTTTGATTCTTCTATTTATTATAGTC
TCAATGTTGTCAACGTTTTTCCAATCTGATCCGATGTATAGCTTATCGCCTAGCTCAAAA
TATCCTCTTGAACGAAAGACAATTAATCATCGCATTCCTTACTACGTAAAAGAAAATTTT
GGATCCGAATATCAAGGATCTATGAGTCGGCTTGAGAGTGCTGTCGAGGAAGAATATATA
ATGAATATGAAAAGAGCATGCTTTAGTGAGAAAAATTATCGTGAGGCAATGATGTCAAGG
GCACGAAGCTTCGGTAGTAGAACACAATATGCTCAGGCTCAAGCATTAAAGACGCCTTCT
TGTGATGCACTCTATCGACTGGGTATATCAGGACGAACATCATATTAA
>g11123.t1 Gene=g11123 Length=375
MTIIEGNIDASEQCVDLASKEISNGNLEKAEKLLLKALKLYPTNRKAELILEKLKAGRFN
TKTSNGSTTTGNNDGIHQRRRPTTAPKADEPKLGEDYTQEQLEIVQKIKKCKDYYEVLGC
NKESTDSEIKKAYKKLALQLHPDKNKAPGSAEAFKAIGNAVAVLTDAEKRKSYDLYGKDE
TNLRRSSSFNNYSGFRNHEYAYARGFESEFTAEELFNMFFGGGFPQQATQARYRRYQHHH
EAQTGQSSLAFGLILLFIIVSMLSTFFQSDPMYSLSPSSKYPLERKTINHRIPYYVKENF
GSEYQGSMSRLESAVEEEYIMNMKRACFSEKNYREAMMSRARSFGSRTQYAQAQALKTPS
CDALYRLGISGRTSY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g11123.t1 | CDD | cd06257 | DnaJ | 113 | 166 | 2.10956E-19 |
| 10 | g11123.t1 | Gene3D | G3DSA:1.10.287.110 | - | 109 | 248 | 4.6E-29 |
| 17 | g11123.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 79 | - |
| 18 | g11123.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 92 | - |
| 3 | g11123.t1 | PANTHER | PTHR43908 | AT29763P-RELATED | 5 | 368 | 1.2E-92 |
| 4 | g11123.t1 | PANTHER | PTHR43908:SF3 | AT29763P-RELATED | 5 | 368 | 1.2E-92 |
| 7 | g11123.t1 | PRINTS | PR00625 | DnaJ domain signature | 115 | 133 | 1.3E-19 |
| 6 | g11123.t1 | PRINTS | PR00625 | DnaJ domain signature | 133 | 148 | 1.3E-19 |
| 5 | g11123.t1 | PRINTS | PR00625 | DnaJ domain signature | 149 | 169 | 1.3E-19 |
| 8 | g11123.t1 | PRINTS | PR00625 | DnaJ domain signature | 169 | 188 | 1.3E-19 |
| 1 | g11123.t1 | Pfam | PF00226 | DnaJ domain | 113 | 174 | 7.5E-24 |
| 2 | g11123.t1 | Pfam | PF09320 | Domain of unknown function (DUF1977) | 268 | 365 | 1.2E-25 |
| 12 | g11123.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 248 | - |
| 13 | g11123.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 249 | 267 | - |
| 11 | g11123.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 268 | 375 | - |
| 19 | g11123.t1 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 113 | 177 | 19.886 |
| 16 | g11123.t1 | SMART | SM00271 | dnaj_3 | 112 | 169 | 5.9E-24 |
| 9 | g11123.t1 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 107 | 222 | 4.97E-27 |
| 15 | g11123.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 267 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K09518 (DnaJ homolog subfamily B member 12)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
