Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DnaJ homolog subfamily B member 12.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11123 g11123.t4 TSS g11123.t4 14279758 14279758
chr_1 g11123 g11123.t4 isoform g11123.t4 14279816 14280870
chr_1 g11123 g11123.t4 exon g11123.t4.exon1 14279816 14280144
chr_1 g11123 g11123.t4 cds g11123.t4.CDS1 14279816 14280144
chr_1 g11123 g11123.t4 exon g11123.t4.exon2 14280242 14280329
chr_1 g11123 g11123.t4 cds g11123.t4.CDS2 14280242 14280329
chr_1 g11123 g11123.t4 exon g11123.t4.exon3 14280390 14280704
chr_1 g11123 g11123.t4 cds g11123.t4.CDS3 14280390 14280704
chr_1 g11123 g11123.t4 exon g11123.t4.exon4 14280770 14280870
chr_1 g11123 g11123.t4 cds g11123.t4.CDS4 14280770 14280868
chr_1 g11123 g11123.t4 TTS g11123.t4 14281569 14281569

Sequences

>g11123.t4 Gene=g11123 Length=833
ATGACGATAATTGAGGGAAATATAGATGCAAGTGAGCAATGTGTTGATTTAGCAAGTAAA
GAAATATCAAATGGAAACTTAGAAAAAGCAGAAAAACTGCTTTTAAAGGCGCTAAAATTA
TATCCAACAAATCGCAAGGCAGAGTTAATTTTAGAGAAATTAAAAGCTGGACGATTCAAC
ACTAAAACATCAAATGGTAGTACTACAACTGGCAACAACGATGGAATTCATCAAAGAAGA
CGGCCAACTACTGCACCAAAAGCAGATGAGCCTAAATTAGGTGAAGATTACACTCAAGAG
CAATTGGAGATTGTTCAGAAAATTAAAAAATGTAAAGATTATTATGAAGTTTTGGGCTGC
AATAAAGAGTCAACGGACTCAGAGATAAAGAAAGCGTATAAAAAATTGGCCTTGCAGCTT
CATCCTGATAAAAATAAGGCACCAGGTTCAGCTGAAGCATTCAAAGCCATTGGAAATGCT
GTTGCAGTTCTCACTGACGCCGAAAAAAGAAAATCATATGACTTGTATGGCAAGGATGAA
ACAAACTTGAGACGATCAAGCAGTTTCAACAACTATAGTGGATTCAGGAATCATGAATAT
GCATATGCTCGTGGATTTGAATCTGAATTTACTGCTGAAGAACTCTTTAATATGTTTTTT
GGAGGTGGATTTCCTCAACAAGCAACACAAGCTCGTTATCGTCGCTATCAACATCATCAT
GAGGCTCAAACTGGACAATCAAGTCTTGCTTTCGGTTTGATTCTTCTATTTATTATAGTC
TCAATGTTGTCAACGTTTTTCCAATCTGATCCGATGTATAGCTTATCGCCTAG

>g11123.t4 Gene=g11123 Length=277
MTIIEGNIDASEQCVDLASKEISNGNLEKAEKLLLKALKLYPTNRKAELILEKLKAGRFN
TKTSNGSTTTGNNDGIHQRRRPTTAPKADEPKLGEDYTQEQLEIVQKIKKCKDYYEVLGC
NKESTDSEIKKAYKKLALQLHPDKNKAPGSAEAFKAIGNAVAVLTDAEKRKSYDLYGKDE
TNLRRSSSFNNYSGFRNHEYAYARGFESEFTAEELFNMFFGGGFPQQATQARYRRYQHHH
EAQTGQSSLAFGLILLFIIVSMLSTFFQSDPMYSLSP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g11123.t4 CDD cd06257 DnaJ 113 166 7.54749E-20
8 g11123.t4 Gene3D G3DSA:1.10.287.110 - 109 234 8.4E-30
15 g11123.t4 MobiDBLite mobidb-lite consensus disorder prediction 61 79 -
16 g11123.t4 MobiDBLite mobidb-lite consensus disorder prediction 61 92 -
2 g11123.t4 PANTHER PTHR43908 AT29763P-RELATED 5 276 2.3E-71
5 g11123.t4 PRINTS PR00625 DnaJ domain signature 115 133 4.8E-20
4 g11123.t4 PRINTS PR00625 DnaJ domain signature 133 148 4.8E-20
3 g11123.t4 PRINTS PR00625 DnaJ domain signature 149 169 4.8E-20
6 g11123.t4 PRINTS PR00625 DnaJ domain signature 169 188 4.8E-20
1 g11123.t4 Pfam PF00226 DnaJ domain 113 174 4.6E-24
10 g11123.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 248 -
11 g11123.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 267 -
9 g11123.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 268 277 -
17 g11123.t4 ProSiteProfiles PS50076 dnaJ domain profile. 113 177 19.886
14 g11123.t4 SMART SM00271 dnaj_3 112 169 5.9E-24
7 g11123.t4 SUPERFAMILY SSF46565 Chaperone J-domain 107 222 3.14E-27
13 g11123.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 245 267 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values