Gene loci information

Transcript annotation

  • This transcript has been annotated as DnaJ homolog subfamily B member 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11123 g11123.t5 TSS g11123.t5 14279758 14279758
chr_1 g11123 g11123.t5 isoform g11123.t5 14279816 14281090
chr_1 g11123 g11123.t5 exon g11123.t5.exon1 14279816 14280144
chr_1 g11123 g11123.t5 cds g11123.t5.CDS1 14279816 14280144
chr_1 g11123 g11123.t5 exon g11123.t5.exon2 14280242 14280329
chr_1 g11123 g11123.t5 cds g11123.t5.CDS2 14280242 14280329
chr_1 g11123 g11123.t5 exon g11123.t5.exon3 14280390 14280704
chr_1 g11123 g11123.t5 cds g11123.t5.CDS3 14280390 14280704
chr_1 g11123 g11123.t5 exon g11123.t5.exon4 14280770 14280873
chr_1 g11123 g11123.t5 cds g11123.t5.CDS4 14280770 14280873
chr_1 g11123 g11123.t5 exon g11123.t5.exon5 14280930 14281090
chr_1 g11123 g11123.t5 cds g11123.t5.CDS5 14280930 14281089
chr_1 g11123 g11123.t5 TTS g11123.t5 14281569 14281569

Sequences

>g11123.t5 Gene=g11123 Length=997
ATGACGATAATTGAGGGAAATATAGATGCAAGTGAGCAATGTGTTGATTTAGCAAGTAAA
GAAATATCAAATGGAAACTTAGAAAAAGCAGAAAAACTGCTTTTAAAGGCGCTAAAATTA
TATCCAACAAATCGCAAGGCAGAGTTAATTTTAGAGAAATTAAAAGCTGGACGATTCAAC
ACTAAAACATCAAATGGTAGTACTACAACTGGCAACAACGATGGAATTCATCAAAGAAGA
CGGCCAACTACTGCACCAAAAGCAGATGAGCCTAAATTAGGTGAAGATTACACTCAAGAG
CAATTGGAGATTGTTCAGAAAATTAAAAAATGTAAAGATTATTATGAAGTTTTGGGCTGC
AATAAAGAGTCAACGGACTCAGAGATAAAGAAAGCGTATAAAAAATTGGCCTTGCAGCTT
CATCCTGATAAAAATAAGGCACCAGGTTCAGCTGAAGCATTCAAAGCCATTGGAAATGCT
GTTGCAGTTCTCACTGACGCCGAAAAAAGAAAATCATATGACTTGTATGGCAAGGATGAA
ACAAACTTGAGACGATCAAGCAGTTTCAACAACTATAGTGGATTCAGGAATCATGAATAT
GCATATGCTCGTGGATTTGAATCTGAATTTACTGCTGAAGAACTCTTTAATATGTTTTTT
GGAGGTGGATTTCCTCAACAAGCAACACAAGCTCGTTATCGTCGCTATCAACATCATCAT
GAGGCTCAAACTGGACAATCAAGTCTTGCTTTCGGTTTGATTCTTCTATTTATTATAGTC
TCAATGTTGTCAACGTTTTTCCAATCTGATCCGATGTATAGCTTATCGCCTAGCTCAAAA
TATCCTCTTGAACGAAAGACAATTAATCATCGCATTCCTTACTACGTAAAAGAAAATTTT
GGATCCGAATATCAAGGATCTATGAGTCGGCTTGAGAGTGCTGTCGAGGAAGAATATATA
ATGAATATGAAAAGAGCATGCTTTAGTGAGAAAAATT

>g11123.t5 Gene=g11123 Length=332
MTIIEGNIDASEQCVDLASKEISNGNLEKAEKLLLKALKLYPTNRKAELILEKLKAGRFN
TKTSNGSTTTGNNDGIHQRRRPTTAPKADEPKLGEDYTQEQLEIVQKIKKCKDYYEVLGC
NKESTDSEIKKAYKKLALQLHPDKNKAPGSAEAFKAIGNAVAVLTDAEKRKSYDLYGKDE
TNLRRSSSFNNYSGFRNHEYAYARGFESEFTAEELFNMFFGGGFPQQATQARYRRYQHHH
EAQTGQSSLAFGLILLFIIVSMLSTFFQSDPMYSLSPSSKYPLERKTINHRIPYYVKENF
GSEYQGSMSRLESAVEEEYIMNMKRACFSEKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11123.t5 CDD cd06257 DnaJ 113 166 2.00474E-19
10 g11123.t5 Gene3D G3DSA:1.10.287.110 - 109 249 2.7E-29
17 g11123.t5 MobiDBLite mobidb-lite consensus disorder prediction 61 79 -
18 g11123.t5 MobiDBLite mobidb-lite consensus disorder prediction 61 92 -
3 g11123.t5 PANTHER PTHR43908 AT29763P-RELATED 5 331 2.9E-84
4 g11123.t5 PANTHER PTHR43908:SF3 AT29763P-RELATED 5 331 2.9E-84
7 g11123.t5 PRINTS PR00625 DnaJ domain signature 115 133 8.6E-20
6 g11123.t5 PRINTS PR00625 DnaJ domain signature 133 148 8.6E-20
5 g11123.t5 PRINTS PR00625 DnaJ domain signature 149 169 8.6E-20
8 g11123.t5 PRINTS PR00625 DnaJ domain signature 169 188 8.6E-20
1 g11123.t5 Pfam PF00226 DnaJ domain 113 174 6.2E-24
2 g11123.t5 Pfam PF09320 Domain of unknown function (DUF1977) 268 332 2.1E-16
12 g11123.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 248 -
13 g11123.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 267 -
11 g11123.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 268 332 -
19 g11123.t5 ProSiteProfiles PS50076 dnaJ domain profile. 113 177 19.886
16 g11123.t5 SMART SM00271 dnaj_3 112 169 5.9E-24
9 g11123.t5 SUPERFAMILY SSF46565 Chaperone J-domain 107 216 4.45E-27
15 g11123.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 245 267 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values