Gene loci information

Transcript annotation

  • This transcript has been annotated as DnaJ homolog subfamily B member 12.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11123 g11123.t6 TSS g11123.t6 14279758 14279758
chr_1 g11123 g11123.t6 isoform g11123.t6 14279816 14281264
chr_1 g11123 g11123.t6 exon g11123.t6.exon1 14279816 14280144
chr_1 g11123 g11123.t6 cds g11123.t6.CDS1 14279816 14280144
chr_1 g11123 g11123.t6 exon g11123.t6.exon2 14280242 14280329
chr_1 g11123 g11123.t6 cds g11123.t6.CDS2 14280242 14280329
chr_1 g11123 g11123.t6 exon g11123.t6.exon3 14280390 14280704
chr_1 g11123 g11123.t6 cds g11123.t6.CDS3 14280390 14280704
chr_1 g11123 g11123.t6 exon g11123.t6.exon4 14280770 14280873
chr_1 g11123 g11123.t6 cds g11123.t6.CDS4 14280770 14280873
chr_1 g11123 g11123.t6 exon g11123.t6.exon5 14280930 14281093
chr_1 g11123 g11123.t6 cds g11123.t6.CDS5 14280930 14281093
chr_1 g11123 g11123.t6 exon g11123.t6.exon6 14281168 14281264
chr_1 g11123 g11123.t6 cds g11123.t6.CDS6 14281168 14281262
chr_1 g11123 g11123.t6 TTS g11123.t6 14281569 14281569

Sequences

>g11123.t6 Gene=g11123 Length=1097
ATGACGATAATTGAGGGAAATATAGATGCAAGTGAGCAATGTGTTGATTTAGCAAGTAAA
GAAATATCAAATGGAAACTTAGAAAAAGCAGAAAAACTGCTTTTAAAGGCGCTAAAATTA
TATCCAACAAATCGCAAGGCAGAGTTAATTTTAGAGAAATTAAAAGCTGGACGATTCAAC
ACTAAAACATCAAATGGTAGTACTACAACTGGCAACAACGATGGAATTCATCAAAGAAGA
CGGCCAACTACTGCACCAAAAGCAGATGAGCCTAAATTAGGTGAAGATTACACTCAAGAG
CAATTGGAGATTGTTCAGAAAATTAAAAAATGTAAAGATTATTATGAAGTTTTGGGCTGC
AATAAAGAGTCAACGGACTCAGAGATAAAGAAAGCGTATAAAAAATTGGCCTTGCAGCTT
CATCCTGATAAAAATAAGGCACCAGGTTCAGCTGAAGCATTCAAAGCCATTGGAAATGCT
GTTGCAGTTCTCACTGACGCCGAAAAAAGAAAATCATATGACTTGTATGGCAAGGATGAA
ACAAACTTGAGACGATCAAGCAGTTTCAACAACTATAGTGGATTCAGGAATCATGAATAT
GCATATGCTCGTGGATTTGAATCTGAATTTACTGCTGAAGAACTCTTTAATATGTTTTTT
GGAGGTGGATTTCCTCAACAAGCAACACAAGCTCGTTATCGTCGCTATCAACATCATCAT
GAGGCTCAAACTGGACAATCAAGTCTTGCTTTCGGTTTGATTCTTCTATTTATTATAGTC
TCAATGTTGTCAACGTTTTTCCAATCTGATCCGATGTATAGCTTATCGCCTAGCTCAAAA
TATCCTCTTGAACGAAAGACAATTAATCATCGCATTCCTTACTACGTAAAAGAAAATTTT
GGATCCGAATATCAAGGATCTATGAGTCGGCTTGAGAGTGCTGTCGAGGAAGAATATATA
ATGAATATGAAAAGAGCATGCTTTAGTGAGAAAAATTATCGTGAGGCAATGATGTCAAGG
GCACGAAGCTTCGGTAGTAGAACACAATATGCTCAGGCTCAAGCATTAAAGACGCCTTCT
TGTGATGCACTCTATCG

>g11123.t6 Gene=g11123 Length=365
MTIIEGNIDASEQCVDLASKEISNGNLEKAEKLLLKALKLYPTNRKAELILEKLKAGRFN
TKTSNGSTTTGNNDGIHQRRRPTTAPKADEPKLGEDYTQEQLEIVQKIKKCKDYYEVLGC
NKESTDSEIKKAYKKLALQLHPDKNKAPGSAEAFKAIGNAVAVLTDAEKRKSYDLYGKDE
TNLRRSSSFNNYSGFRNHEYAYARGFESEFTAEELFNMFFGGGFPQQATQARYRRYQHHH
EAQTGQSSLAFGLILLFIIVSMLSTFFQSDPMYSLSPSSKYPLERKTINHRIPYYVKENF
GSEYQGSMSRLESAVEEEYIMNMKRACFSEKNYREAMMSRARSFGSRTQYAQAQALKTPS
CDALY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11123.t6 CDD cd06257 DnaJ 113 166 2.71128E-19
10 g11123.t6 Gene3D G3DSA:1.10.287.110 - 109 248 4.3E-29
17 g11123.t6 MobiDBLite mobidb-lite consensus disorder prediction 61 79 -
18 g11123.t6 MobiDBLite mobidb-lite consensus disorder prediction 61 92 -
3 g11123.t6 PANTHER PTHR43908 AT29763P-RELATED 5 364 1.6E-91
4 g11123.t6 PANTHER PTHR43908:SF3 AT29763P-RELATED 5 364 1.6E-91
7 g11123.t6 PRINTS PR00625 DnaJ domain signature 115 133 1.2E-19
6 g11123.t6 PRINTS PR00625 DnaJ domain signature 133 148 1.2E-19
5 g11123.t6 PRINTS PR00625 DnaJ domain signature 149 169 1.2E-19
8 g11123.t6 PRINTS PR00625 DnaJ domain signature 169 188 1.2E-19
1 g11123.t6 Pfam PF00226 DnaJ domain 113 174 7.2E-24
2 g11123.t6 Pfam PF09320 Domain of unknown function (DUF1977) 268 364 1.7E-25
12 g11123.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 248 -
13 g11123.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 249 267 -
11 g11123.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 268 365 -
19 g11123.t6 ProSiteProfiles PS50076 dnaJ domain profile. 113 177 19.886
16 g11123.t6 SMART SM00271 dnaj_3 112 169 5.9E-24
9 g11123.t6 SUPERFAMILY SSF46565 Chaperone J-domain 107 222 4.84E-27
15 g11123.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 245 267 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values