Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g11123 | g11123.t8 | TSS | g11123.t8 | 14279758 | 14279758 |
chr_1 | g11123 | g11123.t8 | isoform | g11123.t8 | 14279816 | 14281356 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon1 | 14279816 | 14280144 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS1 | 14279816 | 14280144 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon2 | 14280242 | 14280329 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS2 | 14280242 | 14280329 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon3 | 14280390 | 14280704 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS3 | 14280390 | 14280704 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon4 | 14280770 | 14280873 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS4 | 14280770 | 14280873 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon5 | 14280930 | 14281097 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS5 | 14280930 | 14281097 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon6 | 14281168 | 14281264 |
chr_1 | g11123 | g11123.t8 | cds | g11123.t8.CDS6 | 14281168 | 14281171 |
chr_1 | g11123 | g11123.t8 | exon | g11123.t8.exon7 | 14281326 | 14281356 |
chr_1 | g11123 | g11123.t8 | TTS | g11123.t8 | 14282289 | 14282289 |
>g11123.t8 Gene=g11123 Length=1132
ATGACGATAATTGAGGGAAATATAGATGCAAGTGAGCAATGTGTTGATTTAGCAAGTAAA
GAAATATCAAATGGAAACTTAGAAAAAGCAGAAAAACTGCTTTTAAAGGCGCTAAAATTA
TATCCAACAAATCGCAAGGCAGAGTTAATTTTAGAGAAATTAAAAGCTGGACGATTCAAC
ACTAAAACATCAAATGGTAGTACTACAACTGGCAACAACGATGGAATTCATCAAAGAAGA
CGGCCAACTACTGCACCAAAAGCAGATGAGCCTAAATTAGGTGAAGATTACACTCAAGAG
CAATTGGAGATTGTTCAGAAAATTAAAAAATGTAAAGATTATTATGAAGTTTTGGGCTGC
AATAAAGAGTCAACGGACTCAGAGATAAAGAAAGCGTATAAAAAATTGGCCTTGCAGCTT
CATCCTGATAAAAATAAGGCACCAGGTTCAGCTGAAGCATTCAAAGCCATTGGAAATGCT
GTTGCAGTTCTCACTGACGCCGAAAAAAGAAAATCATATGACTTGTATGGCAAGGATGAA
ACAAACTTGAGACGATCAAGCAGTTTCAACAACTATAGTGGATTCAGGAATCATGAATAT
GCATATGCTCGTGGATTTGAATCTGAATTTACTGCTGAAGAACTCTTTAATATGTTTTTT
GGAGGTGGATTTCCTCAACAAGCAACACAAGCTCGTTATCGTCGCTATCAACATCATCAT
GAGGCTCAAACTGGACAATCAAGTCTTGCTTTCGGTTTGATTCTTCTATTTATTATAGTC
TCAATGTTGTCAACGTTTTTCCAATCTGATCCGATGTATAGCTTATCGCCTAGCTCAAAA
TATCCTCTTGAACGAAAGACAATTAATCATCGCATTCCTTACTACGTAAAAGAAAATTTT
GGATCCGAATATCAAGGATCTATGAGTCGGCTTGAGAGTGCTGTCGAGGAAGAATATATA
ATGAATATGAAAAGAGCATGCTTTAGTGAGAAAAATTATCGTAAGTGAGGCAATGATGTC
AAGGGCACGAAGCTTCGGTAGTAGAACACAATATGCTCAGGCTCAAGCATTAAAGACGCC
TTCTTGTGATGCACTCTATCGACTGGGTATATCAGGACGAACATCATATTAA
>g11123.t8 Gene=g11123 Length=335
MTIIEGNIDASEQCVDLASKEISNGNLEKAEKLLLKALKLYPTNRKAELILEKLKAGRFN
TKTSNGSTTTGNNDGIHQRRRPTTAPKADEPKLGEDYTQEQLEIVQKIKKCKDYYEVLGC
NKESTDSEIKKAYKKLALQLHPDKNKAPGSAEAFKAIGNAVAVLTDAEKRKSYDLYGKDE
TNLRRSSSFNNYSGFRNHEYAYARGFESEFTAEELFNMFFGGGFPQQATQARYRRYQHHH
EAQTGQSSLAFGLILLFIIVSMLSTFFQSDPMYSLSPSSKYPLERKTINHRIPYYVKENF
GSEYQGSMSRLESAVEEEYIMNMKRACFSEKNYRK
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
14 | g11123.t8 | CDD | cd06257 | DnaJ | 113 | 166 | 2.75786E-19 |
10 | g11123.t8 | Gene3D | G3DSA:1.10.287.110 | - | 109 | 249 | 2.7E-29 |
17 | g11123.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 79 | - |
18 | g11123.t8 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 92 | - |
3 | g11123.t8 | PANTHER | PTHR43908 | AT29763P-RELATED | 5 | 334 | 9.0E-85 |
4 | g11123.t8 | PANTHER | PTHR43908:SF3 | AT29763P-RELATED | 5 | 334 | 9.0E-85 |
7 | g11123.t8 | PRINTS | PR00625 | DnaJ domain signature | 115 | 133 | 8.8E-20 |
6 | g11123.t8 | PRINTS | PR00625 | DnaJ domain signature | 133 | 148 | 8.8E-20 |
5 | g11123.t8 | PRINTS | PR00625 | DnaJ domain signature | 149 | 169 | 8.8E-20 |
8 | g11123.t8 | PRINTS | PR00625 | DnaJ domain signature | 169 | 188 | 8.8E-20 |
1 | g11123.t8 | Pfam | PF00226 | DnaJ domain | 113 | 174 | 6.2E-24 |
2 | g11123.t8 | Pfam | PF09320 | Domain of unknown function (DUF1977) | 268 | 334 | 3.1E-17 |
12 | g11123.t8 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 248 | - |
13 | g11123.t8 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 249 | 267 | - |
11 | g11123.t8 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 268 | 335 | - |
19 | g11123.t8 | ProSiteProfiles | PS50076 | dnaJ domain profile. | 113 | 177 | 19.886 |
16 | g11123.t8 | SMART | SM00271 | dnaj_3 | 112 | 169 | 5.9E-24 |
9 | g11123.t8 | SUPERFAMILY | SSF46565 | Chaperone J-domain | 107 | 216 | 4.71E-27 |
15 | g11123.t8 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 245 | 267 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
There are no GO annotations for this transcript.
This gene does not belong to any pathways.
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.