General information for g11159.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Deoxynucleoside kinase.
Parent gene
- The parent gene g11159 is located on chr_1: 14370495..14371147 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11159 | g11159.t1 | TTS | g11159.t1 | 14369580 | 14369580 |
| chr_1 | g11159 | g11159.t1 | isoform | g11159.t1 | 14369938 | 14371147 |
| chr_1 | g11159 | g11159.t1 | exon | g11159.t1.exon1 | 14369938 | 14370513 |
| chr_1 | g11159 | g11159.t1 | cds | g11159.t1.CDS1 | 14369938 | 14370513 |
| chr_1 | g11159 | g11159.t1 | exon | g11159.t1.exon2 | 14370586 | 14370782 |
| chr_1 | g11159 | g11159.t1 | cds | g11159.t1.CDS2 | 14370586 | 14370782 |
| chr_1 | g11159 | g11159.t1 | exon | g11159.t1.exon3 | 14371123 | 14371147 |
| chr_1 | g11159 | g11159.t1 | cds | g11159.t1.CDS3 | 14371123 | 14371147 |
| chr_1 | g11159 | g11159.t1 | TSS | g11159.t1 | 14371251 | 14371251 |
Sequences
>g11159.t1 Gene=g11159 Length=798
ATGGTGGTTTATAATCATGCATTGAGACGCTTGGTTTCATCTAAATTAATTAACAATTTT
ACAATCAGAATGGCTTCATTCTCAGTGAATAAAAAGGCTCCATTTACTGTCTTTGTTGAG
GGCAATATAGGAAGTGGAAAAACGACTTTTCTCAATCATTTTAGTCAATTTCAGAATGTC
TGTTTAATGACCGAGCCTGTTGAACAATGGCGCAATCTTAACGGAGTAAATCTGTTTGAC
TTGATGTATAAGAATCCAGATAGATGGGCTATGACTTTTCAAAACTATGTTACTTTGACT
ATGCTTAAAAACCACATTAAGATAACTGACAAGCCTGTTAAACTGATGGAACGATCGATG
TACAGTGCTCGTTACTGTTTCGTTGAGAAAATGCTTGCAAGTGGAATTCTTCAAGAAGGA
ATGTATCACGTGCTTCAAGAGTGGTATAATTTTATTCACGAACATCACCAAATTCAATGT
GATCTCATTGTCTATTTAAGAACAAGTCCAGAAGTTGTATATGAACGTATGAAAAAACGT
GGAAGAATCGAAGAAAGTGGTGTCTCATTTCAATATTTAAAAGATTTGCATGAGCTTCAT
GAAAATTGGCTAATTCATGGAAAATTTTATCGACCAGCACAAGTGTTAGTACTCGATGCA
AATTTAGATTTAGATGGTATTGGAGCCGAATATGTTAGATCAGAATCTAGTATATTACGA
CCTATTGTCATTGAAAATACGAATCATCAAATGGGTATCACTGCATCGCCTAGTAAACGT
GAACGAGAGTTGTATTGA
>g11159.t1 Gene=g11159 Length=265
MVVYNHALRRLVSSKLINNFTIRMASFSVNKKAPFTVFVEGNIGSGKTTFLNHFSQFQNV
CLMTEPVEQWRNLNGVNLFDLMYKNPDRWAMTFQNYVTLTMLKNHIKITDKPVKLMERSM
YSARYCFVEKMLASGILQEGMYHVLQEWYNFIHEHHQIQCDLIVYLRTSPEVVYERMKKR
GRIEESGVSFQYLKDLHELHENWLIHGKFYRPAQVLVLDANLDLDGIGAEYVRSESSILR
PIVIENTNHQMGITASPSKRERELY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11159.t1 | CDD | cd01673 | dNK | 39 | 221 | 1.28448E-57 |
| 6 | g11159.t1 | Gene3D | G3DSA:3.40.50.300 | - | 20 | 223 | 1.7E-68 |
| 2 | g11159.t1 | PANTHER | PTHR10513:SF24 | THYMIDINE KINASE 2, MITOCHONDRIAL | 24 | 231 | 3.1E-78 |
| 3 | g11159.t1 | PANTHER | PTHR10513 | DEOXYNUCLEOSIDE KINASE | 24 | 231 | 3.1E-78 |
| 1 | g11159.t1 | Pfam | PF01712 | Deoxynucleoside kinase | 38 | 224 | 1.7E-54 |
| 4 | g11159.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 227 | 3.91E-44 |
| 5 | g11159.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05961 (deoxynucleoside kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
