Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP-binding cassette sub-family B member 6, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1116 g1116.t2 isoform g1116.t2 8280233 8281867
chr_3 g1116 g1116.t2 exon g1116.t2.exon1 8280233 8281867
chr_3 g1116 g1116.t2 cds g1116.t2.CDS1 8281311 8281676
chr_3 g1116 g1116.t2 TSS g1116.t2 NA NA
chr_3 g1116 g1116.t2 TTS g1116.t2 NA NA

Sequences

>g1116.t2 Gene=g1116 Length=1635
GGTGAGTTTACTTTTATGATTTTGTTGAATTTCAAGAATTTCAATTAAAATTTTTGATTT
GTTTGAAGTTACAAATTTAAAAATTTTTGTAAACAAAAACAATCAAGTTTTTAAATAACT
TTGAATTTTCAAAAAAAATTATAAAATTTTCAATTTATTTCTTTTCATCAGGTGCCGGTA
AAAGCACAATAATGAGACTTCTCTTTAGATTCTATGACATTGAAAATGGTGCAATTATAA
TTGATGGGCAAAATATTAAAGCTGTCACACAAGCAAGTTTAAGAAAGGCAATTGGAGTTG
TGCCTCAGGATACAGTTTTGTTTAATGAAACAATCAAGTATAACATTAAATATGGTCGAA
TTGATGCTGAAGATTCTGAAGTAATTCTTGCAAGTCGAAGTGCTGACATTCATGATAAAA
TTATGTCATTTCCTCAACAATATGAGACAGTTGTTGGTGAACGAGGTTTACGATTAAGTG
GTGGTGAAAAGCAAAGAGTTGCAATTGCAAGGTTTGTTATTAATAAATTTTTCAATATTA
ATCAAGATCTTATTTAAAGATCAAATTCAAATCTTGAAAGGTTTAGATCAAGATCAAAGT
TAAAATTTTAAGGTCAAGTTTAAGATAATTTTTCAAGATCAAAAAGCATAAGATGAAATC
AAACTTAAAATTTCAAAACCGAAACATAAATCAAATTGATAGGCTTAAAATTTTTTCTTT
GTTCTTAAATTTTTGATTTTAATATTAGAAATTTAAATTTTAAAAGATCGTTAAAATTTA
AAAATTTATATTAAATTTGATATTGATGCAGCAATGGATTATTAAGAATTTATTTTTTAT
CTTTTAGAACAATTCTAAAATCACCGCAAATTTTGCTTCTTGATGAAAGTACATCAGCAT
TAGACACAAATACAGAAAGAAATATTCAATCAGCATTATCAAAAGTTTGTGCAAATAAAA
CAACAATAATAATTGCTCATCGACTTTCAACAATAATTCATGCTGATGAAATTTTAGTGC
TTAAAGATGGTGAAATAGTTGAAAGAGGACAACATGAAAAATTACTAGAACAAAATGGAC
TTTATGCTGAAATGTGGAATCAACAACTGAATAATTTAGAAGGTGAAAAAATTCGTGATG
AAAAAAATTTAGAAAAGGAGAAAAAAGAGGAAGAAAATTTAGCAGTTCGTGCTATGCCAC
CACATCATCATCACCATCACCATCATCATTAAAATATATAAAATAAAAAAAATATTTCAT
TATTTTTGATATAATAAACATTCTTATCATAGTAAAAGTTTATTTTTGCATATTTTTTCT
ACTTCTCATTCTTGACTTGCTCTTGGCTATGTAATTTTCCATAATTCTAAAAAATGTTGA
AAGTCTTGAAGAAAAATATAAATAATTTATCGCGATGGATGGATGGATGGTGTGAGAAAG
GAAAGAGCAGGAAACATTTAAAGTCTCCTTTCCGCGGAACGAGATCAATGTTCGCTACTT
GTTAGAATAAAGTGTGGGCATAAATGCAATTTGCATGTACTTACAATCGCCTCGGCTCTC
TTCAATGTCTAAAATGATGTTCGTTTGTCCCGTTTCGACATCGCACAAATTGTGCTTTGC
ATAAACGCTGCTGAA

>g1116.t2 Gene=g1116 Length=121
MRLLFRFYDIENGAIIIDGQNIKAVTQASLRKAIGVVPQDTVLFNETIKYNIKYGRIDAE
DSEVILASRSADIHDKIMSFPQQYETVVGERGLRLSGGEKQRVAIARFVINKFFNINQDL
I

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1116.t2 Gene3D G3DSA:3.40.50.300 - 1 117 0
2 g1116.t2 PANTHER PTHR24221 ATP-BINDING CASSETTE SUB-FAMILY B 1 111 0
3 g1116.t2 PANTHER PTHR24221:SF503 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 6, MITOCHONDRIAL 1 111 0
1 g1116.t2 Pfam PF00005 ABC transporter 2 112 0
4 g1116.t2 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 111 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed