General information for g11176.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11176 is located on chr_1: 14430558..14431275 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11176 | g11176.t1 | isoform | g11176.t1 | 14425152 | 14431275 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon1 | 14425152 | 14429344 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS1 | 14425152 | 14429344 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon2 | 14429405 | 14430151 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS2 | 14429405 | 14430151 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon3 | 14430206 | 14430486 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS3 | 14430206 | 14430486 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon4 | 14430558 | 14430990 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS4 | 14430558 | 14430990 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon5 | 14431058 | 14431163 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS5 | 14431058 | 14431163 |
| chr_1 | g11176 | g11176.t1 | exon | g11176.t1.exon6 | 14431225 | 14431275 |
| chr_1 | g11176 | g11176.t1 | cds | g11176.t1.CDS6 | 14431225 | 14431275 |
| chr_1 | g11176 | g11176.t1 | TSS | g11176.t1 | NA | NA |
| chr_1 | g11176 | g11176.t1 | TTS | g11176.t1 | NA | NA |
Sequences
>g11176.t1 Gene=g11176 Length=5811
ATGCATTATTTATTAATTGTATCGTATATTTTATTGATTTTCAATACGAATCTTATTACT
AATAGTCAAGCAGTGATTAATGGAAAAGAAACGGTTGAAGAATATATCAATAAAAAGATT
GATGTTATTACGAAAACAACAAAAAGTCACCATAATGACAAAATTAAGCTAAAAGAAAAT
TCTATATCATTGATGTGTGACAAAACAAGAGGAGATAAAATTAAATTTGTAAAGGATATA
GATGGTTACCTCTTCTTTCTCAGTCAAAATGAATTGTTTGCCACGAAAGTCAATCATGAA
AATATTGCGAAACTATATTTTCTTGGAACACTCTTGGATATCGCAGAAGAAGATCCCGTA
ATAAGTGTTCAGATCGAAAAATGGCAAAATTTCTTTATGGTTGTCATTCAACAATTCACA
AGATTGAAAGTGTACTTAGTCAAGCTAAATGAACATAAAAGTTCTAAAATTAATCACATA
CATAAGATGAATTTTGATTCAATATTTGATAAATTTAGGATATTTCGAAAGGGAAAAGAT
GTTTTACTAGTCACATATCAAATTCAAGAGCAAGCTGCAAACAAATTGACATTCTACAAG
TGGCAAAACTCATATTTTATGAAAGAGTCTTCAGAGACTACTGAACTTCCAAATAGAGGA
GATTTATTTGTCTATAATGAAAATCCCGATGAGACATTGATTCTTTCTCTTGGCTATGGG
ATTGGAAATGAGACTTCACATGTGGCTGTTTTCAAATACGATGAAGACACAAATCGATGG
TTAAAATTACAAAAGATGCATTTCAAAAAAGATTATATTGAGCCGTATACTTCAAATGGT
GTTCTCTATCTCATAGGATGTTATAGCGATTCAATTTGTGCGCTGTATAAATGGAATAGT
AATGCACACTTTCATCGACATTTGAAGCTCTCAAACAACGTATTTGAAATAATAAAATCA
ATATATTCTCGTCATAGTATAATCATCATAGAAAATTTTCAAAATAATCTCTCATTCTAT
TCATCAACCAATATTACCAGTGACGAGCCAGCTTTGCGACTTACAAAATCTAGTGAACTA
TCCAAATATAGCATTTATAAATCACCCAAGAATCTTTTATATTTTGTAGATGTTAATCTT
AATGAAACTTCAATGTTGATGAATTTCTATGAGATGATAATTAATGAAAATGAGCTGAAT
GAGATGCGAGATAATGACAGAAAAACGGATCCTATCGAATGTATTTTGCAACTCAAAAGA
TCATTAAAAAGTCGGTCATTAAAAGTTAAATCATCAGAAAAAGATATTCAAATATTGAAA
GATACAAACGGTTCATTTAACATCAAAAACAAAAGTCTCTTGAATACAAATTATGTTAAA
CTGCAAGACTCTAATGTTTTGACTCTTAAAATGCCATTCAATGTTTCTGTGCACACAAAA
GATCTAATGCAGCAATCTGTTTCTACAAATATTTTATTGAGCAAATTGAATAGAATTTTA
AGTAGTAGTCCAAGATCTGATGTCAGAGCAAAAGATGAAAGTGTAGATGATAAAATGGAC
CTCGAAACAATCAGTGTAGGTAATTTAATTTACAAAGGAAATCAAGATATTTTCAAAGAT
ATTATGAGAAAGTCACAACAAACGTTAAGTTTCAGTGATCAAATAAAATTAGGCTCAGTC
TCTGCAAATAAACTTGTAGTCCAGTCCAATCTAATAAATCGTATACCGGTTGATAAGTTG
TTGAACATAACAAAAGCGCAATCAATATCTGGTGTAAAAACACTTCAAAGCTTAAAAGTA
AATGAATTAATGATAAATGGTTTGTTGAATAACATTCCCCTTGATTTCCTAAAATCAAAC
AAAGATAATCAACTTGATAAAGTTCGTGAAATAGAATTTAATGGGAATATCAATGCAATG
CATCTTAATGTGAAAATGTTAAACGGATACAACGTTTCATCATTGATAAATGAATTGTGT
CTTAATGATAATAACACGAAAGTAAATGGAGATTTATTCTTTAAGAATACGCTCAAACTA
AAGCAATTAGTGGCAAATCATATCAAATCTATTCCAATCAATGATTTCATGACTGTGAGC
ACAAACCAAGATATTGATACTGATATGTTCATACCGAAATTTCACGCAAATACTATCAAT
GCAAATTTGGTGAACAATGAGAATTTATTAGAGAACGTTGCACTTACAACTAAGGAGAAT
TTTATTGAAGTTCCTACGAAATTCATGAATATTAGTATTATGGATAATTTAAATATTCAA
GATATAGTCGATGAAGATGAGAATGCAATTGATTCAAGAAGTTTTGTGGAAATGATAAAG
AGACATGTTATTGGTACACAAACGTCAGATTTAACACAGATTTACAACAATAAAGTTATT
ATAAAAGGTTCATTAATATTCAAAGACATTAACAGCTATTCACCAAAAACAAAAATTTTT
GTCAATAATCAAGAAATTCCACAAAATATATCACAAACTTATTGGATGAAAAATATTCAG
CAGCATGTTCATGTACCAAGTTTCAAAATCAAAAACAAAGAAGTAACAATTTTCAATGGA
CTTATCACAAAACATCTAAATCGTCATCCAATAGATAATTTTCTCCTATTAAATAATGAA
AACCCACAAGGTCCTATAAACATTAAATTTGAGAAGGCAATAGTTGAAGGAAGTGTTATT
GTGCACGAAAGAAATTTTCTATCTATGCTTCATCGATTAAGTCAACTAGCTATTCATCGT
GACAGTTCACATGTTGAAATTTCAAGTCCCGTTGAATTCAGAAATCAATTGACTATAAAG
AATCTACAAACTCCATTGTTGAATAACATACCTGTTAATTCTTTGGTACATAAAAATCTT
AATTATGTGTCTTTTGATGGAACCAAAAATTTTGAAAATCTGCAAACAGTGCGAATTTAT
GTTGATCAAAATATGTTTGCTGAAAATTACAATAATGTTAGTTTAGAAAAATTAATTCGT
GAAGCTATTCGAATTGATCAACCGATTTATATTGAAAATCTACGAATCGATAGTTTCACA
GCAAATAATTTAATAGTTAGTCAATTTGAAAGACACAAATTTGATGATATGATAAGAAAT
ATACAAGAAGAACTCAATTTTGGAGCAGAATCGAATAAAGGAAAAAGAAGTATTCATATT
CATGGAGATGCAGAATTTAAATCTAATATAAATATTGATTATCTTAATAATGATCGAGTG
CCATTTGATAATTTTATCGAAATTTTAGCTATGAAAGATAAACCAAATCAGGAAATAGGT
GGAAAGAAATTCTTCATGAAAGATTTCATCGTTAAAGATAATATACAAGTGAAAATTATC
AATGAAAATTCAATTGATCATTTACTTAAGCATTCTCTATCGCGAGGTTCCAAACAAATG
ATTCAATCGAAAAAATTATCTGTTGAAAACTTGAAACTAAAAGCACTTCATACAAACAAA
CTTAATGATCTTGCATGGGATAATTTCATTGATAAGACAAAATTAAATCTACCTTTATCA
TTTAATCTTGAAATAGATGAGATTGAAGCTGATACTTTTTATACAGAATATGCAACGATA
GATTTGAATGAAATGATAAGATTTATCAAATTCCCGAAACGCACAAATTGGAATCATATA
ACAGCGAAACAAGGGTCAAATATTATTTTTGGTGATGAAACGCATTTAGATTATTTGATG
AAATATACAGTAAAGAAAAATGCTGATTTACAAACTATTTTTGGAAATGTAGCTATTGTG
AACACACGTGATTTTTATATGAAAAATGTCGCAAAACATGATGGACTTATTTTCACTCGA
AATGCACCATTTAATATTACTGTTTTGAATATTGATAGTGTTAAAAATAATTCACACTCA
GAAGTTATCACTGGTAAAGCAACGATTTCGCCAGATTTTAGATTCGATGCCAATAATCTA
ATAATTGATAAAAGATGCAATTTTTACTCAAATTACATCAATGAAATTAATGTGTTAAGT
TTGAACAGAACAATTCATCGCAATGAAAGTTTTTTCAATTCAGAAAAACACTTTGAAAAT
CTTTATGTGAATGAGCTTTATATTGAAAATGGCTTGATAAATGGAATTATTCCGAGTAAT
ATAGTTTATGCATCAAATACAGCTCAACAACTACCAATATTAAACTTAAAAAGTTTGGAG
GTGATAAATATGGAAATAAGTTCATTAAATTCATATTCATTTGAATATTTACTTGAAAAT
AGACTGAAAAAATATAGTGAAACTGTACAAGACGTTCAGAATATCATCACTTTCAACTCA
ATTCATTTTCTAAATGACACAAGCATGACATCAATCAATAATGTATTGATCGATGATGCA
GTTTTTACTTCATCTGATCAATTTCAAAATCAACAGCATATAATGGGACATAAAATTATT
AATGGAAAACTAATTTTAAAAGGTCCAGCTATAATTGGTAGTCTCAATGGCGTTGATATC
AAGGATTTTTTCAAATCAACTGTAAATCTTCAAAGTAATTATCGATCGGATGTCCCTCTT
CAATTGCCTGCGATTGAATTAAAGGGTGGAATGCAAGTAAATCAAAACATCAATGGTCGT
AATATTGAGGAATTGTTGTCTTCTGATGCGCATATGCCAAAATTAGCAGATCTGGTTTCT
CTAATTCGTGATGTTGATTATAAAATCTCATTAATTGATGAAAATTATTCTAAGAAGCGA
GAAAATAGAAGAATGTTATACGTTGACATAGATAATGATGTTGAATTTAAATATAAACCA
TCAATTGCTCAAAACAAGGAAGATGATGAAATTAATTGTGAAAAACAGAATGAATTGGAA
TTTAATCCAAAGTTGAAAGAAGTAACCATTAGCAAAAGATCAGAGTCAGAAATGAGAGTT
GAATTAAGGTCAGTAAAAATACGATTAACACCAAACATTATTTGCAAAGCGGATGCTGTT
GGCAGTAAGAATTTTGAAGTGTATTGGAATTATCAATCTGATTTAAAGCTCAACTACTTT
CAAAATTTTTCGTTTCCTAATATCATTACGGATGTAAAATTCACAGAATCGTTAAATGGA
ATAGTACACATGATATTAGTTCTTAAAAATGAAGTCATTGATAAATCGGAAATAGTTTTT
CTTATACTGAATACAAAAGATCATTCATGGGAACAACATCAAGAAAAGCTTAGTGACTTT
AACAAAATTGTTAAAACGGGTGTTGTTGAAGCATTTGATGGAGAAAGTTATGTAGTTGTC
TCAACTTTCAACGATAACTCTGAAGGCGATAAAGTAATGATTTACAAGCTAGATCCTACA
ATAAATCAATTTGTGAAATCACAGCAGTCATTCACTGGCAGTAACTATGATATAATTCTT
GGCATCAATGTTAAGCCAAAAAATAGAATAATGAAACCAAGAACATTCTTGCTTTTCTCG
AGAACAGATAGTAGAGAAATAAAAATTTATCGCATGAAAGATGGCTCTAAAGAGTTTGCA
TTTCAACGAATGCTAGACGATTTTAAAGACAATATTGTTGAAGTACTCGTTTTATATATT
AATGAGATGCCTTTCTTTATTGTAAGTCAACGTTCTGGATTATTCTGTATGTATGAATGG
CGTGGCATTGAAAGTTGGCAGAGCAAATATTGCGGTAGATTCGAAAACATTCATCAAATG
AAGTCATTCGAGTATTTAAATCGACAACATTTGTTCCTAGCTTCGATAGCACAAAAAACT
GAGCCATCTATAAATGCTTTAGCTATTTATCGTCAAGGCGATTGGTTTTAA
>g11176.t1 Gene=g11176 Length=1936
MHYLLIVSYILLIFNTNLITNSQAVINGKETVEEYINKKIDVITKTTKSHHNDKIKLKEN
SISLMCDKTRGDKIKFVKDIDGYLFFLSQNELFATKVNHENIAKLYFLGTLLDIAEEDPV
ISVQIEKWQNFFMVVIQQFTRLKVYLVKLNEHKSSKINHIHKMNFDSIFDKFRIFRKGKD
VLLVTYQIQEQAANKLTFYKWQNSYFMKESSETTELPNRGDLFVYNENPDETLILSLGYG
IGNETSHVAVFKYDEDTNRWLKLQKMHFKKDYIEPYTSNGVLYLIGCYSDSICALYKWNS
NAHFHRHLKLSNNVFEIIKSIYSRHSIIIIENFQNNLSFYSSTNITSDEPALRLTKSSEL
SKYSIYKSPKNLLYFVDVNLNETSMLMNFYEMIINENELNEMRDNDRKTDPIECILQLKR
SLKSRSLKVKSSEKDIQILKDTNGSFNIKNKSLLNTNYVKLQDSNVLTLKMPFNVSVHTK
DLMQQSVSTNILLSKLNRILSSSPRSDVRAKDESVDDKMDLETISVGNLIYKGNQDIFKD
IMRKSQQTLSFSDQIKLGSVSANKLVVQSNLINRIPVDKLLNITKAQSISGVKTLQSLKV
NELMINGLLNNIPLDFLKSNKDNQLDKVREIEFNGNINAMHLNVKMLNGYNVSSLINELC
LNDNNTKVNGDLFFKNTLKLKQLVANHIKSIPINDFMTVSTNQDIDTDMFIPKFHANTIN
ANLVNNENLLENVALTTKENFIEVPTKFMNISIMDNLNIQDIVDEDENAIDSRSFVEMIK
RHVIGTQTSDLTQIYNNKVIIKGSLIFKDINSYSPKTKIFVNNQEIPQNISQTYWMKNIQ
QHVHVPSFKIKNKEVTIFNGLITKHLNRHPIDNFLLLNNENPQGPINIKFEKAIVEGSVI
VHERNFLSMLHRLSQLAIHRDSSHVEISSPVEFRNQLTIKNLQTPLLNNIPVNSLVHKNL
NYVSFDGTKNFENLQTVRIYVDQNMFAENYNNVSLEKLIREAIRIDQPIYIENLRIDSFT
ANNLIVSQFERHKFDDMIRNIQEELNFGAESNKGKRSIHIHGDAEFKSNINIDYLNNDRV
PFDNFIEILAMKDKPNQEIGGKKFFMKDFIVKDNIQVKIINENSIDHLLKHSLSRGSKQM
IQSKKLSVENLKLKALHTNKLNDLAWDNFIDKTKLNLPLSFNLEIDEIEADTFYTEYATI
DLNEMIRFIKFPKRTNWNHITAKQGSNIIFGDETHLDYLMKYTVKKNADLQTIFGNVAIV
NTRDFYMKNVAKHDGLIFTRNAPFNITVLNIDSVKNNSHSEVITGKATISPDFRFDANNL
IIDKRCNFYSNYINEINVLSLNRTIHRNESFFNSEKHFENLYVNELYIENGLINGIIPSN
IVYASNTAQQLPILNLKSLEVINMEISSLNSYSFEYLLENRLKKYSETVQDVQNIITFNS
IHFLNDTSMTSINNVLIDDAVFTSSDQFQNQQHIMGHKIINGKLILKGPAIIGSLNGVDI
KDFFKSTVNLQSNYRSDVPLQLPAIELKGGMQVNQNINGRNIEELLSSDAHMPKLADLVS
LIRDVDYKISLIDENYSKKRENRRMLYVDIDNDVEFKYKPSIAQNKEDDEINCEKQNELE
FNPKLKEVTISKRSESEMRVELRSVKIRLTPNIICKADAVGSKNFEVYWNYQSDLKLNYF
QNFSFPNIITDVKFTESLNGIVHMILVLKNEVIDKSEIVFLILNTKDHSWEQHQEKLSDF
NKIVKTGVVEAFDGESYVVVSTFNDNSEGDKVMIYKLDPTINQFVKSQQSFTGSNYDIIL
GINVKPKNRIMKPRTFLLFSRTDSREIKIYRMKDGSKEFAFQRMLDDFKDNIVEVLVLYI
NEMPFFIVSQRSGLFCMYEWRGIESWQSKYCGRFENIHQMKSFEYLNRQHLFLASIAQKT
EPSINALAIYRQGDWF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g11176.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 4 | g11176.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 3 | - |
| 5 | g11176.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 4 | 14 | - |
| 6 | g11176.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 24 | - |
| 2 | g11176.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 1936 | - |
| 1 | g11176.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20227 (female sterile (1) M3, polehole)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
