General information for g11187.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11187 is located on chr_1: 14481402..14482827 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11187 | g11187.t5 | isoform | g11187.t5 | 14479718 | 14482827 |
| chr_1 | g11187 | g11187.t5 | exon | g11187.t5.exon1 | 14479718 | 14479961 |
| chr_1 | g11187 | g11187.t5 | cds | g11187.t5.CDS1 | 14479718 | 14479961 |
| chr_1 | g11187 | g11187.t5 | exon | g11187.t5.exon2 | 14480016 | 14480619 |
| chr_1 | g11187 | g11187.t5 | cds | g11187.t5.CDS2 | 14480016 | 14480619 |
| chr_1 | g11187 | g11187.t5 | exon | g11187.t5.exon3 | 14482379 | 14482827 |
| chr_1 | g11187 | g11187.t5 | cds | g11187.t5.CDS3 | 14482379 | 14482556 |
| chr_1 | g11187 | g11187.t5 | TSS | g11187.t5 | NA | NA |
| chr_1 | g11187 | g11187.t5 | TTS | g11187.t5 | NA | NA |
Sequences
>g11187.t5 Gene=g11187 Length=1297
TAATTAATGGGAAATGTATAAGAAGTATATTTTGTATGATTGTTGTTAACAAATTGCCAT
ATGTCTCGTATTTTTTTTAAAAAAAAAAGATGACAATGTGAGAGTGTAAAAGAAAGATGA
CTGAGAAAATTTGGAGATGGTAGACATACTATATATAAAAGACTTTTGACAATAATTTTC
AGTTCAGTTGCAATTCAACATCACAGCGGAAAAAATCAAAGACAAACGCGAGTAATTTAT
ATTTTTGAGAAAAGTTAAATTTTCTATCAAGATGATTTCATTGATAAAGTTTGTGTTATC
ACTTATATGTGTGTTATTCCTATTTGCATATGTATCGGCACAAAGTAATTCAACGGATTT
GACACTTGCCGATGTTGCAAAAACTTTTCTTGAAGATGATGAAGAAGGACGAAAAAGGAA
ACGTCATCAATTTGGATATCATTTGTGGTGGTGGGGTTTGAAAGCACTTTCTGTATTAAT
AACGGTGAAAATCAAGATTATTTTGCTGTTCCTTTTCTTGGGAGGTGGAATTTTTTATGG
TCTAAAAGTATGGCAAGGAACTGCACTTGGATGTCCTGAACCAATTATTCAAGAAGTGAA
ACATCATGATGGAATTATTCCCTATCATTCACACTTTTCTGATATTTCGTATTCTGCACC
ACCACCAGATGCATTTGGCGGTTATAATGGTTTTAGTGGATATAGTGGTGCTGATATAGG
CGGAATTTATTCAAATACACCTGCCTCACCGTCTTTTAATGGTCCAACAGGTTTTAGTAA
TGGAGCAGCAGCAACAGGAAGTGGAGCATCTGTGGGAACAATTGACGCAGGATCAGTTGT
AGGTCCATCAAATACTTATTTACCACCAAGTAGCCGAAGAAGAAGAGTAAGCGGAAATGC
TAGAAGTGATAGCTCAAGCGAATCTATTTCATCCATGTTCACTGATCTCATGTTTCGTTT
TCTTGGAGTGAACACTGATTCATGCAAGAGACGATTCGTTTGTGAGTTAGAATTTAGAAA
TCCATTCGTTGGCTATGCTATGAATTACATTGGAAATGATTTATTTAGTGAATTTAGAAT
GGAAAAAAATAGTCCAGAATCACCTAAGAAATTTTCTGATTGCGCTAAATTATATGCCGA
TTGTGAAGTTCCAAAAGAACATACATTCGCCACAAAGAAACGTAGACGTTATTATTTGAA
GAAGAGATTGAATCAAACAACGGTTGAAGAAAAAGAAGAAACTACAATCAACCCAAACAA
TGATTTAGTTACAAAATACGTTAAGAATCAAGAGTAA
>g11187.t5 Gene=g11187 Length=341
MISLIKFVLSLICVLFLFAYVSAQSNSTDLTLADVAKTFLEDDEEGRKRKRHQFGYHLWW
WGLKALSVLITVKIKIILLFLFLGGGIFYGLKVWQGTALGCPEPIIQEVKHHDGIIPYHS
HFSDISYSAPPPDAFGGYNGFSGYSGADIGGIYSNTPASPSFNGPTGFSNGAAATGSGAS
VGTIDAGSVVGPSNTYLPPSSRRRRVSGNARSDSSSESISSMFTDLMFRFLGVNTDSCKR
RFVCELEFRNPFVGYAMNYIGNDLFSEFRMEKNSPESPKKFSDCAKLYADCEVPKEHTFA
TKKRRRYYLKKRLNQTTVEEKEETTINPNNDLVTKYVKNQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11187.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 214 | - |
| 9 | g11187.t5 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 10 | g11187.t5 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 11 | g11187.t5 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 18 | - |
| 13 | g11187.t5 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
| 8 | g11187.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 57 | - |
| 12 | g11187.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 58 | 83 | - |
| 7 | g11187.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 84 | 341 | - |
| 6 | g11187.t5 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 1 | g11187.t5 | SignalP_GRAM_NEGATIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
| 5 | g11187.t5 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
| 3 | g11187.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
| 2 | g11187.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
