General information for g11211.t57
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
Parent gene
- The parent gene g11211 is located on chr_1: 14600657..14601436 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11211 | g11211.t57 | TTS | g11211.t57 | 14598503 | 14598503 |
| chr_1 | g11211 | g11211.t57 | isoform | g11211.t57 | 14598609 | 14599139 |
| chr_1 | g11211 | g11211.t57 | exon | g11211.t57.exon1 | 14598609 | 14598730 |
| chr_1 | g11211 | g11211.t57 | cds | g11211.t57.CDS1 | 14598609 | 14598730 |
| chr_1 | g11211 | g11211.t57 | exon | g11211.t57.exon2 | 14598786 | 14599139 |
| chr_1 | g11211 | g11211.t57 | cds | g11211.t57.CDS2 | 14598786 | 14599047 |
| chr_1 | g11211 | g11211.t57 | TSS | g11211.t57 | NA | NA |
Sequences
>g11211.t57 Gene=g11211 Length=476
ATAATGAAGATCCACAATGGTGTTATGAGAATTTCATCAATTATCGTTCGCTGAAATCAG
CTGATAATGTTCGTCAACAATTGGCTCGTATCATGGACAGATTTAATTTGAAGCGCACGA
GTACAGAGTTCACAAGCAAGGATTATTATGTTAATATTCGTAAAGCACTTGTTGAAGGAT
TCTTCATGCAAGTCGCACATTTGGAACGCACTGGTCACTACTTAACAATCAAGGATAATC
AGATTGTTCAATTACATCCATCCACATGCTTAGATCATAAACCAGATTGGGTCATTTATA
ATGAGTTTGTATTAACAACAAAGAATTATATTAGGACAGTAACCGATATTAAACCCGAAT
GGTTATTGAAGCTTGCACCACAATATTACGATCTCAACAATTTCCCAGCATGTGAGGCAA
AGAGACAGTTAGAAAACTTACAAGCAAGGCTAGAGAGTCGTCAATATCAATATTAA
>g11211.t57 Gene=g11211 Length=127
MDRFNLKRTSTEFTSKDYYVNIRKALVEGFFMQVAHLERTGHYLTIKDNQIVQLHPSTCL
DHKPDWVIYNEFVLTTKNYIRTVTDIKPEWLLKLAPQYYDLNNFPACEAKRQLENLQARL
ESRQYQY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g11211.t57 | PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | 1 | 121 | 0 |
| 3 | g11211.t57 | PANTHER | PTHR18934:SF217 | PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED | 1 | 121 | 0 |
| 1 | g11211.t57 | Pfam | PF07717 | Oligonucleotide/oligosaccharide-binding (OB)-fold | 22 | 98 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
