Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 313a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11246 g11246.t1 TTS g11246.t1 14897088 14897088
chr_1 g11246 g11246.t1 isoform g11246.t1 14897371 14898939
chr_1 g11246 g11246.t1 exon g11246.t1.exon1 14897371 14897555
chr_1 g11246 g11246.t1 cds g11246.t1.CDS1 14897371 14897555
chr_1 g11246 g11246.t1 exon g11246.t1.exon2 14897613 14898009
chr_1 g11246 g11246.t1 cds g11246.t1.CDS2 14897613 14898009
chr_1 g11246 g11246.t1 exon g11246.t1.exon3 14898067 14898939
chr_1 g11246 g11246.t1 cds g11246.t1.CDS3 14898067 14898939
chr_1 g11246 g11246.t1 TSS g11246.t1 NA NA

Sequences

>g11246.t1 Gene=g11246 Length=1455
ATGACAGTTCTTGAACAGTTAATTTTTGCAACAATTGCATTTTTAGTGATTTCTGTTTTA
ATTTTTTATTGGAGACGAAAAAGGCTTTATAACTTAGCTGATAAAATTCCTGGTGAGAAT
GGTTTACCATTTTTGGGAGTTTTACACAAGTTTACAAAGTCTGATTTGAATGAATATCAT
AAAGAAATAATGAAACTCATTCTCAAAAATAAGCCAATATCTAAAACTTGGTTTGGGCCT
CAATTTGTTATACTAACTGAAGATGCAGAATGCATTCATAAAATTTTAAATTCTTCACAC
ACACAAAATAAACCATCATATTTTTATAAAGGAATGATGATTGATGAAGGATTGCTAGCT
ATTAATGGACATCAATATGACAAGCATAGAAAAATTCTCAATAAATCTTTCACACCAAAC
ATGTTGCAGAAATTTATTCCAACATTTAACGAAAAATCAAGAGTTTGTATGATGAACTTG
AGTAAAAGATTAAGTAGCGATGAAGCTTTTGATATTTTTAAATATGTTGGTGCATGCACT
TTAGATTCTTTTATTTCTGGACATTATAATTATGATCAAAATTTTTACGATAGCGATTTA
GTTAAAATTATTGAAGAATCTCGATCGTTAGTGATGAAAAAAGTTGTAAGACCATGGTAT
AATATCAAAATTTTATTTAAAAATTCATCTTTGCGTCATCAAATGGAATATTATTATGAA
AGATTGTTGAGAATTCTTAATGACATAAAAACCAATAATTTGCAAAATCCAAACACAAAA
TTACCAGACCTTGTTCTAAATCTTTTGATGAAGAGTAAAAATAATTTTACTGAAGAAGAA
ATTCGTGATGAAATGATAACTTTTATTTATGCTGGATATGAAACAACAGCAATTTCCCTA
AGTTCAATTTTACTGATGTTAGCAATGCATAAAGACGTTCAACAAAAGGTTATCGATGAA
ATTGATGAAATTGTTTCATCAAATGAAGAAATCAGCAATGAAACACTATTAAAATTTTCT
TATGTTGAACTGGTTATAAAGGAATCTTTGCGACTTTTCCCAGCAGCTGGAATAACTGGA
AGACAATCAACAGAAGAAATTGAATTAGCTGATTATACTATACCTAAAGGAACTTTATTT
GTTTTGTCAATTTTTGATATGCAACGTTCATCAAAATATTGGGGTGATGATGCTCTTCAA
TTCAATCCTGACAGATTTTTACCAGAAAATATTGAAAACGTTAATTCACATGCTTATGTA
CCATTTTCAGGTGGTAAAAGAATTTGCATCGGATGGAAATATTCAATGATTTTTATGAAA
ATCTTCTTAATTCATTTCTTCAAAAACTACACAATTGACACAAAGCAAGAGTTTAAAGAT
ATTAATTTCGATATCATACCATTGATGATAATTTCACAAGGTTACATGATAAACATTCAG
AAAAGACAAAAATAA

>g11246.t1 Gene=g11246 Length=484
MTVLEQLIFATIAFLVISVLIFYWRRKRLYNLADKIPGENGLPFLGVLHKFTKSDLNEYH
KEIMKLILKNKPISKTWFGPQFVILTEDAECIHKILNSSHTQNKPSYFYKGMMIDEGLLA
INGHQYDKHRKILNKSFTPNMLQKFIPTFNEKSRVCMMNLSKRLSSDEAFDIFKYVGACT
LDSFISGHYNYDQNFYDSDLVKIIEESRSLVMKKVVRPWYNIKILFKNSSLRHQMEYYYE
RLLRILNDIKTNNLQNPNTKLPDLVLNLLMKSKNNFTEEEIRDEMITFIYAGYETTAISL
SSILLMLAMHKDVQQKVIDEIDEIVSSNEEISNETLLKFSYVELVIKESLRLFPAAGITG
RQSTEEIELADYTIPKGTLFVLSIFDMQRSSKYWGDDALQFNPDRFLPENIENVNSHAYV
PFSGGKRICIGWKYSMIFMKIFLIHFFKNYTIDTKQEFKDINFDIIPLMIISQGYMINIQ
KRQK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11246.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 20 484 6.0E-103
2 g11246.t1 PANTHER PTHR24291:SF140 CYTOCHROME P450 4C3-RELATED 7 482 1.9E-83
3 g11246.t1 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 7 482 1.9E-83
6 g11246.t1 PRINTS PR00463 E-class P450 group I signature 280 297 8.3E-12
10 g11246.t1 PRINTS PR00385 P450 superfamily signature 291 308 2.9E-10
5 g11246.t1 PRINTS PR00463 E-class P450 group I signature 300 326 8.3E-12
12 g11246.t1 PRINTS PR00385 P450 superfamily signature 344 355 2.9E-10
7 g11246.t1 PRINTS PR00463 E-class P450 group I signature 389 413 8.3E-12
4 g11246.t1 PRINTS PR00463 E-class P450 group I signature 419 429 8.3E-12
9 g11246.t1 PRINTS PR00385 P450 superfamily signature 420 429 2.9E-10
8 g11246.t1 PRINTS PR00463 E-class P450 group I signature 429 452 8.3E-12
11 g11246.t1 PRINTS PR00385 P450 superfamily signature 429 440 2.9E-10
1 g11246.t1 Pfam PF00067 Cytochrome P450 37 474 4.8E-77
16 g11246.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
17 g11246.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 24 -
15 g11246.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 25 484 -
19 g11246.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 422 431 -
13 g11246.t1 SUPERFAMILY SSF48264 Cytochrome P450 36 482 2.1E-95
18 g11246.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 24 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed