Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11342 g11342.t6 TTS g11342.t6 15730785 15730785
chr_1 g11342 g11342.t6 isoform g11342.t6 15730891 15732328
chr_1 g11342 g11342.t6 exon g11342.t6.exon1 15730891 15731231
chr_1 g11342 g11342.t6 cds g11342.t6.CDS1 15731230 15731231
chr_1 g11342 g11342.t6 exon g11342.t6.exon2 15731300 15732070
chr_1 g11342 g11342.t6 cds g11342.t6.CDS2 15731300 15732070
chr_1 g11342 g11342.t6 exon g11342.t6.exon3 15732133 15732328
chr_1 g11342 g11342.t6 cds g11342.t6.CDS3 15732133 15732328
chr_1 g11342 g11342.t6 TSS g11342.t6 15732358 15732358

Sequences

>g11342.t6 Gene=g11342 Length=1308
ATGTTTTTATTAAAATTTGATCGATTTTCAAGAAATATTTTGTCATCTCAACATATAAGA
TGTTTTTGTTACAAAGCAATAAAGAGACCCAACTTGAATAAAGCACCAGACAAAGAGTAT
ATAGAGAAGAAAATGAAGGAATATGATTTACCGAAACTACTCCAAAGAAAAATTCAAGTT
TCAGGACCAATCACAATTGCATCATATATGAGAGAGATTTTAACAAATCCTAATAGTGGA
TATTATATGTGTAGAGATGTTTTTGGTTCAAAAGGAGATTTTATTACTTCACCTGAAATA
AGTCAGATATTTGCTGAACTCGTAGCAGCATGGTGCATAGTTGAATATCAAAAAGTGGGA
ATGCCAAAGCCTCTTCAAATTATTGAACTGGGCCCAGGAAGAGGAACGTTTATTCAAGAT
ATTCTTCGTGTTTGTAGCAAATTAAGAATTGTTCCTTCTGATTCTCTTTCAATACACTTA
GTTGAACTTAGTCCATATTTGAGCAAAATGCAAGCTCAAAAGTTGTGCTATTCTTCAACA
GAGTTCGAAAAACAAAATGATTTACCATTTTATCGAATTGGCGAAACTGTTTCAGGTAGC
AAAGTTTATTGGTATAATAGAATTGAAGATGTACCTAAAGAATTTTCAATTATTCTTGCT
CATGAGTTTTTCGATGCTCTGCCAATACATAAATTACAAAAAGATGGAAATATTTGGAAA
GAAATTTTAGTTGATATTGATCCAGAGAATGAAGAAAAATTCAGATTTGTTATATCAAGA
AACGAGACACCCATCTCCAAACTTTATGGAACATTACACCCAGATGAGACAAGAAAACAT
GTAGAGATTTCGCCTGATTCAGAATTAATTTTAAAACACATTGCTGAAAGGCTAGAAGAA
TTTGGTGGATTCGGCTTAATTATGGACTATGGTCATTTTGGTGAAGGAGAAGATACCTTT
AGAGTATAACATAATTTACATGATCCATTAGATAATCCTGGTACAGCTGATTTAACTGCT
GATGTCAATTTTGCAAATTTAAAAAAAATATTAGAAACTGATGAAAAACTCATAACTTTT
GGTCCTGTAGAGCAAGGTATATTTTTAGAACGAATGGGAGCTAATGAGAGACTTGATATA
TTACTCAAATCTTGTGAACAAGATCAAAAAGAAACGTTGAAATCTGGTCTTGATATGTTA
GTAAATAGAAGTAAAATGGGTTCTCGATTTAAATTCTTAAGCATGTTTCCTAATGTATTA
AAAGCTTATTTAGAAAAATTTCCAGTACATGGTTTTAGTGAGAAATAA

>g11342.t6 Gene=g11342 Length=322
MFLLKFDRFSRNILSSQHIRCFCYKAIKRPNLNKAPDKEYIEKKMKEYDLPKLLQRKIQV
SGPITIASYMREILTNPNSGYYMCRDVFGSKGDFITSPEISQIFAELVAAWCIVEYQKVG
MPKPLQIIELGPGRGTFIQDILRVCSKLRIVPSDSLSIHLVELSPYLSKMQAQKLCYSST
EFEKQNDLPFYRIGETVSGSKVYWYNRIEDVPKEFSIILAHEFFDALPIHKLQKDGNIWK
EILVDIDPENEEKFRFVISRNETPISKLYGTLHPDETRKHVEISPDSELILKHIAERLEE
FGGFGLIMDYGHFGEGEDTFRV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g11342.t6 Gene3D G3DSA:3.40.50.12710 - 36 321 0
2 g11342.t6 PANTHER PTHR12049 UNCHARACTERIZED 37 321 0
3 g11342.t6 PANTHER PTHR12049:SF7 PROTEIN ARGININE METHYLTRANSFERASE NDUFAF7, MITOCHONDRIAL 37 321 0
1 g11342.t6 Pfam PF02636 Putative S-adenosyl-L-methionine-dependent methyltransferase 107 317 0
4 g11342.t6 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 50 315 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed