General information for g11347.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11347 is located on chr_1: 15740135..15742966 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11347 | g11347.t3 | isoform | g11347.t3 | 15740135 | 15742966 |
| chr_1 | g11347 | g11347.t3 | exon | g11347.t3.exon1 | 15740135 | 15740138 |
| chr_1 | g11347 | g11347.t3 | exon | g11347.t3.exon2 | 15740202 | 15740259 |
| chr_1 | g11347 | g11347.t3 | exon | g11347.t3.exon3 | 15742108 | 15742966 |
| chr_1 | g11347 | g11347.t3 | cds | g11347.t3.CDS1 | 15742205 | 15742966 |
| chr_1 | g11347 | g11347.t3 | TTS | g11347.t3 | 15742990 | 15742990 |
| chr_1 | g11347 | g11347.t3 | TSS | g11347.t3 | NA | NA |
Sequences
>g11347.t3 Gene=g11347 Length=921
TCAGATAACGGTGGACCAACTTTTGGAATTCACTCAACAGAAGCATCAAATTCTCCTTTA
AGAGGACAAAAGGGAAGTGTATGGGAAGGTGGCACTCGAGTACCAGCTTGTATCTACAGC
CCTTTGATTAAGAATAAAAATAGAGTCACGAATGAGTTTATGTATATTACAGACATTCTC
CCAACTATGGCTGCAGCTGCAAATATATCAATTACAAATAATATTGATGGAATCAATCAA
TTTGAAACAATCTCAAATAGCAAAATAACTGAAAGAAAAGATATACTTTATAATATTGAG
TCAGTGTTTGGATTTAGCGCTATCATGAGCAATGGTTTTAAATTGGTTAATGGAAGTGAA
AATATGAAATATTCGGGCTGGTTTGGTAGCTCTGGTGATTATGCTGCAACAAGTTTAGAA
GAATACTTTCAAAACATTATCAATTCAATTACATATAAAAATTTGCCGATGATTGATATA
GATATAGTAAAGAAAATGCGAGAAGAATCAAAAACTGTTTGTGATAATAGTATATCAACA
ACAAAATGCAATCCAATACAAGCACCATGTTTGTTTGACATTATAAATGACCCATGCGAA
AAAGATAATCTCGCTGAAATTTATCCAGACAAAGTTAAAATGTTGATTGAAAAATTAAAT
ATTGAAATTCAATTAATGGTTCCAACAATTCGAGTTAAATCAGATCCATTATGTGATCCA
AAGCTTCATAACTGGACTTGGACGTGGTGGAGGCAAGATGATGACCAATCTGCAAACGTT
AATAAGGAAGATGATGATTTTTCTTCGCGAACTACCTTAATTTTTGTAATTTGTTTCATT
TTCATAATAATTCAATTTTTCATATTCTTCATTAAATGTAAAAAGAATTCTGAAAATTTT
ACGATTTTCCGCCTTCAATAA
>g11347.t3 Gene=g11347 Length=253
MYITDILPTMAAAANISITNNIDGINQFETISNSKITERKDILYNIESVFGFSAIMSNGF
KLVNGSENMKYSGWFGSSGDYAATSLEEYFQNIINSITYKNLPMIDIDIVKKMREESKTV
CDNSISTTKCNPIQAPCLFDIINDPCEKDNLAEIYPDKVKMLIEKLNIEIQLMVPTIRVK
SDPLCDPKLHNWTWTWWRQDDDQSANVNKEDDDFSSRTTLIFVICFIFIIIQFFIFFIKC
KKNSENFTIFRLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g11347.t3 | PANTHER | PTHR10342 | ARYLSULFATASE | 1 | 210 | 2.7E-40 |
| 2 | g11347.t3 | PANTHER | PTHR10342:SF264 | MIP05773P | 1 | 210 | 2.7E-40 |
| 6 | g11347.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 218 | - |
| 7 | g11347.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 238 | - |
| 5 | g11347.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 239 | 253 | - |
| 4 | g11347.t3 | SUPERFAMILY | SSF53649 | Alkaline phosphatase-like | 2 | 197 | 6.54E-20 |
| 3 | g11347.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 238 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed