General information for g11362.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 85/88 kDa calcium-independent phospholipase A2.
Parent gene
- The parent gene g11362 is located on chr_1: 15804956..15806209 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11362 | g11362.t5 | isoform | g11362.t5 | 15804956 | 15806209 |
| chr_1 | g11362 | g11362.t5 | exon | g11362.t5.exon1 | 15804956 | 15805869 |
| chr_1 | g11362 | g11362.t5 | cds | g11362.t5.CDS1 | 15804957 | 15805571 |
| chr_1 | g11362 | g11362.t5 | exon | g11362.t5.exon2 | 15806200 | 15806209 |
| chr_1 | g11362 | g11362.t5 | TSS | g11362.t5 | 15806364 | 15806364 |
| chr_1 | g11362 | g11362.t5 | TTS | g11362.t5 | NA | NA |
Sequences
>g11362.t5 Gene=g11362 Length=924
ATGTTTAGCGCCATTAAAAATTTATTGACGGGAGAGATCCCTCCAAGCAAAGTCATAGAG
AAAAGTTTAGATTCTATTGCAAGCTACAATGTTTTACAACGAGATGATTGCATGCTTCTG
TTTGCTCCACAAATAACCGATAATTCTACATCAAACACATCAAGTAAAAGTAAAAAGTTT
TACGAAATAATCCTCTATCGTCCTGCATCAGAGTCAATAAATTCATCTTATAGGTAAGAG
AACTTTTTTAAAGACTCTTTAGTGACGTCATTATTAAAAAATATAAAATACTCATTCTTG
ATGTATTAATGAATCATTTCGAAATCAACAGTTTATTTCGTGCAGAAACACAGGAAGAAG
CTTTGGCACGTTTTGAAGCTTATACCCATCGAGTACCCAATTTTGTTACAATGGTTAATC
AATACTATAATATTCCTGGATTACAAAAAGTTTGCGATCTTTTAACGGAAAATCCTTCAT
GGTCGATTGCACACTTGGTTGCATACTTTAATCTTACTGAGTATTTATCGAATCCAGCTG
TCGCAGAACTAATTGACTATCCTGATCATGTGAAATATATGACACCACTTCAAGTTGCAA
TTAAAGCTAAAAATATTGAGGTTGTCAAAGGATTATTGAACGTAACGAAATTAGATCATT
TAGACTATAACAGCAATGGTATCTTTCATTACGCAGCAAACACATCAAAAGAAATGATAA
ATATCTTGACTAGTAAGAGTTTAGTAAATTTAAATCATATCAATTTAGATGGCATTACTC
CACTACATCATGCTTGTTTAAGCAACAATCCTGATTGTGTCAATGCATTGGTATGTGCGG
GAGCTGATGTTAACATCTCCGCAAAACACGTTAATGGAAGTGGAAAAGGGGGAAACAAAT
TGCAAAATAGAAATGCTCCTTCTA
>g11362.t5 Gene=g11362 Length=205
MNHFEINSLFRAETQEEALARFEAYTHRVPNFVTMVNQYYNIPGLQKVCDLLTENPSWSI
AHLVAYFNLTEYLSNPAVAELIDYPDHVKYMTPLQVAIKAKNIEVVKGLLNVTKLDHLDY
NSNGIFHYAANTSKEMINILTSKSLVNLNHINLDGITPLHHACLSNNPDCVNALVCAGAD
VNISAKHVNGSGKGGNKLQNRNAPS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11362.t5 | Gene3D | G3DSA:1.25.40.20 | - | 44 | 193 | 0.0000e+00 |
| 2 | g11362.t5 | PANTHER | PTHR24139 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 | 5 | 187 | 0.0000e+00 |
| 3 | g11362.t5 | PANTHER | PTHR24139:SF34 | 85/88 KDA CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 | 5 | 187 | 0.0000e+00 |
| 1 | g11362.t5 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 124 | 184 | 0.0000e+00 |
| 9 | g11362.t5 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 89 | 186 | 1.3735e+01 |
| 10 | g11362.t5 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 154 | 186 | 1.2209e+01 |
| 6 | g11362.t5 | SMART | SM00248 | ANK_2a | 89 | 119 | 3.3000e+01 |
| 7 | g11362.t5 | SMART | SM00248 | ANK_2a | 120 | 150 | 9.6000e+02 |
| 5 | g11362.t5 | SMART | SM00248 | ANK_2a | 154 | 183 | 5.0000e-07 |
| 4 | g11362.t5 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 89 | 184 | 0.0000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed