General information for g11420.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g11420 is located on chr_1: 16132408..16133642 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11420 | g11420.t1 | isoform | g11420.t1 | 16130337 | 16132408 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon1 | 16130337 | 16130487 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS1 | 16130337 | 16130487 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon2 | 16130548 | 16130805 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS2 | 16130548 | 16130805 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon3 | 16130870 | 16131002 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS3 | 16130870 | 16131002 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon4 | 16131071 | 16131224 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS4 | 16131071 | 16131224 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon5 | 16131327 | 16131472 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS5 | 16131327 | 16131472 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon6 | 16131544 | 16131664 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS6 | 16131544 | 16131664 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon7 | 16131723 | 16131857 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS7 | 16131723 | 16131857 |
| chr_1 | g11420 | g11420.t1 | exon | g11420.t1.exon8 | 16131917 | 16132408 |
| chr_1 | g11420 | g11420.t1 | cds | g11420.t1.CDS8 | 16131917 | 16132408 |
| chr_1 | g11420 | g11420.t1 | TSS | g11420.t1 | NA | NA |
| chr_1 | g11420 | g11420.t1 | TTS | g11420.t1 | NA | NA |
Sequences
>g11420.t1 Gene=g11420 Length=1590
ATGGTTTTTTCTGAAAATACATCAAACATGAATAGCATAAATAATATTGAGGAATATATA
TCAATTTCTGATTTCTATAATGGCAAAAGTGTTTTTATTACGGGAGGCACCGGTTTCTTA
GGGAAAATGTTAATAGAAAAATTACTGCGTTCTTGTCCTGGTATTAAAAACATTTATCTG
CTTATGCGACCCAAGCGTGGCGCTGAAATAAATACACGTCTTAATGAAATATTAAATAGT
CAGTTGTTTGATAAGCTTCGTAAGGATCGTCCAAATGACTTGAATAAAATCATACCGATA
CTTGGTGATATAACATCAGAGGATTTGGGCATTTCGGAAAGTGATCAAAACCTTTTAAGC
GAAACGATAAATATTGTATTTCATTCTGCGGCAACTGTGAAATTTGACGAAAAATTGAAA
CTTTCTGTTACCATAAATATGCTAGGAACAAAACGATTATTAGAACTCTGTCAGCGAATG
CTTTATTTAGAGGCTTTGGTTCATGTCTCAACCGCTTACTGCAATTGCGATCGGGCAGAT
GTAGCAGAAATAATTTATAATCCACCATATAAACCTGATGATATTATATCGCTTGTCCAA
TGGCTTCCAGAGGATTTGTTGGATAAATTAACACCCTCATTGATTGGAAATCGTCCAAAT
ACGTATACATTTACAAAAGCTCTAACGGAAGCAATGCTGCTAAAGGAAGCAGGAAATTTA
CCTGTGGTCATTGTCAGACCCTCTATTGTCTTATCGAGTATGAATGAGCCTATGAGCGGT
TGGGTTGATAATTGGAACGGGCCTACCGGTATAGTTTCTGCAGTAGGAAAAGGAATTTTT
CATACAATCATGTGCAATGAAGATAGTGTTGCTGATTTTGTTCCAGTTGATCTGGTAATT
AATTTAATGGTAGCTGCTGCTTGGCGAACAGCAACCACAAAATCAACTCAAATGACAGTG
TACAACTGTTGCACGGGTGTTAATAAACCCATTACTTGGGGAAGATTAGTATCGTTAGCA
ATTGAAAAAATGAGACTCCATCCTTTAGAGGGAGTTTTCTGGTATCCAACTGGAATTCTT
CGCAAAAACAGAACACTGAATACAATTCACTCAATTTTGGCTCACTATATTCCCGCTTAT
ATTTTGGACATTTTAGCACGTATTGCCGGCCGTAAACCAATTATGATCAAAGTTCAGGAT
AAATTAGCAAAATCAGTGCAATGTTTAGAATACTTCACAACACACCAATGGAAATTTCAT
TCAGACAATGTTCAAGTATTGTTAGATTCAATGAATGAAAAAGATAAAAATGAATTTCAA
TTTGATGTACGTACAATTGAGTGGGAAAATTATGTAGAAAAGTACGTTTTAGGTTTTCGA
CAATTCCTTTTCAAACAAAGTCCATCATCATTAGAAGTCAGTCGAAAAAGGATGCACAGG
TTGAAAATTCTTCACCAAATTTCAAAGTTACTAATAGTCATTTTGTTTTGGAGATTTCTA
TTTAAACGTTCAAAAAAGCTTCGAGATTTATGGAGAAATTTTGTTTCTGTAATTTCAACA
CTTTCTATCACACTTGTAAGAACTAAGTAA
>g11420.t1 Gene=g11420 Length=529
MVFSENTSNMNSINNIEEYISISDFYNGKSVFITGGTGFLGKMLIEKLLRSCPGIKNIYL
LMRPKRGAEINTRLNEILNSQLFDKLRKDRPNDLNKIIPILGDITSEDLGISESDQNLLS
ETINIVFHSAATVKFDEKLKLSVTINMLGTKRLLELCQRMLYLEALVHVSTAYCNCDRAD
VAEIIYNPPYKPDDIISLVQWLPEDLLDKLTPSLIGNRPNTYTFTKALTEAMLLKEAGNL
PVVIVRPSIVLSSMNEPMSGWVDNWNGPTGIVSAVGKGIFHTIMCNEDSVADFVPVDLVI
NLMVAAAWRTATTKSTQMTVYNCCTGVNKPITWGRLVSLAIEKMRLHPLEGVFWYPTGIL
RKNRTLNTIHSILAHYIPAYILDILARIAGRKPIMIKVQDKLAKSVQCLEYFTTHQWKFH
SDNVQVLLDSMNEKDKNEFQFDVRTIEWENYVEKYVLGFRQFLFKQSPSSLEVSRKRMHR
LKILHQISKLLIVILFWRFLFKRSKKLRDLWRNFVSVISTLSITLVRTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g11420.t1 | CDD | cd05236 | FAR-N_SDR_e | 29 | 348 | 2.95299E-148 |
| 12 | g11420.t1 | CDD | cd09071 | FAR_C | 373 | 464 | 2.44895E-36 |
| 7 | g11420.t1 | Gene3D | G3DSA:3.40.50.720 | - | 21 | 368 | 5.3E-83 |
| 3 | g11420.t1 | PANTHER | PTHR11011:SF65 | FATTY ACYL-COA REDUCTASE-RELATED | 18 | 497 | 9.9E-198 |
| 4 | g11420.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 18 | 497 | 9.9E-198 |
| 1 | g11420.t1 | Pfam | PF07993 | Male sterility protein | 33 | 303 | 2.5E-76 |
| 2 | g11420.t1 | Pfam | PF03015 | Male sterility protein | 375 | 465 | 8.6E-33 |
| 9 | g11420.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 482 | - |
| 10 | g11420.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 483 | 501 | - |
| 8 | g11420.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 502 | 529 | - |
| 6 | g11420.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 29 | 347 | 1.74E-36 |
| 5 | g11420.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 483 | 501 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13356 (alcohol-forming fatty acyl-CoA reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
