Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Tyrosine-protein kinase Src64B.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11448 g11448.t5 isoform g11448.t5 16318836 16319407
chr_1 g11448 g11448.t5 exon g11448.t5.exon1 16318836 16318838
chr_1 g11448 g11448.t5 exon g11448.t5.exon2 16318889 16318953
chr_1 g11448 g11448.t5 exon g11448.t5.exon3 16319005 16319073
chr_1 g11448 g11448.t5 cds g11448.t5.CDS1 16319039 16319073
chr_1 g11448 g11448.t5 exon g11448.t5.exon4 16319140 16319407
chr_1 g11448 g11448.t5 cds g11448.t5.CDS2 16319140 16319407
chr_1 g11448 g11448.t5 TTS g11448.t5 16319618 16319618
chr_1 g11448 g11448.t5 TSS g11448.t5 NA NA

Sequences

>g11448.t5 Gene=g11448 Length=405
AAGGTGTCCGATTTTGGTCTGGCTAGGGTCATTAATGATGAAGCATATTTCGCAACACAA
GGATCAAGATTTCCATACAAGTGGACATCTGTAGAAGGAATTATGTATGGGAGATTTACT
ATTAAATCTGACGTATGGTCTTATGGAATACTTTTGATGGAACTTTTCACATACGGTAGA
GTGCCATATCCCGGTATGTCAAACGATGAAGTGGCTGAAAAGGTTGAACGTGGATATAGA
ATGCCACGACCAAATAGACCTGAAGTAGCTTTAGAAATATACGAAATAATGCTCCAATGT
TGGAATGCACAGGAAGAAAGACGACCAACTTTTGAATATTTAAAACATTTCTTTAAAAAT
TATGGTGTCGCTTCAGAAATGCAATATAGAGATCTTGATGAATGA

>g11448.t5 Gene=g11448 Length=100
MYGRFTIKSDVWSYGILLMELFTYGRVPYPGMSNDEVAEKVERGYRMPRPNRPEVALEIY
EIMLQCWNAQEERRPTFEYLKHFFKNYGVASEMQYRDLDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11448.t5 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1 88 0.00000
2 g11448.t5 PANTHER PTHR24418:SF44 TYROSINE-PROTEIN KINASE FYN 1 97 0.00000
3 g11448.t5 PANTHER PTHR24418 TYROSINE-PROTEIN KINASE 1 97 0.00000
5 g11448.t5 PRINTS PR00109 Tyrosine kinase catalytic domain signature 9 31 0.00000
4 g11448.t5 PRINTS PR00109 Tyrosine kinase catalytic domain signature 55 77 0.00000
1 g11448.t5 Pfam PF07714 Protein tyrosine and serine/threonine kinase 3 83 0.00000
9 g11448.t5 ProSiteProfiles PS50011 Protein kinase domain profile. 1 85 12.96600
7 g11448.t5 SMART SM00219 tyrkin_6 1 84 0.00011
6 g11448.t5 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 2 88 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004713 protein tyrosine kinase activity MF
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values