Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g11466 | g11466.t31 | isoform | g11466.t31 | 16397067 | 16407076 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon1 | 16397067 | 16397553 |
chr_1 | g11466 | g11466.t31 | TTS | g11466.t31 | 16397069 | 16397069 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS1 | 16397468 | 16397553 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon2 | 16399504 | 16399573 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS2 | 16399504 | 16399573 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon3 | 16400629 | 16400691 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS3 | 16400629 | 16400691 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon4 | 16400819 | 16400894 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS4 | 16400819 | 16400894 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon5 | 16401901 | 16401971 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS5 | 16401901 | 16401971 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon6 | 16402845 | 16402962 |
chr_1 | g11466 | g11466.t31 | cds | g11466.t31.CDS6 | 16402845 | 16402916 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon7 | 16403391 | 16403528 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon8 | 16406585 | 16406868 |
chr_1 | g11466 | g11466.t31 | exon | g11466.t31.exon9 | 16407017 | 16407076 |
chr_1 | g11466 | g11466.t31 | TSS | g11466.t31 | 16407060 | 16407060 |
>g11466.t31 Gene=g11466 Length=1367
AGTAAAGTTTTTCTTCAGTTCGCCATCAAAACTGTTCAAGTCGCGGATTCAGATTCAAGT
TCTCTGGTGCTTTCGTAATACCGTAGTAAAAACACATTACCAAAATGGATGCGATTAAGA
AAAAAATGCAAGCAATGAAGCTTGAGAAGGATAACGCATTAGATCGCGCCCTTCTCTGTG
AACAGCAAGCTCGTGATGCAAACACACGTGCTGAAAAGGCCGAAGAAGAGGCCCGCACAT
TGCAAAAGAAGATCCAAACAATTGAAAATGATTTGGATCAGACACAAGAACAAGAGACTC
TTGTTAATGGAAAGCTTGAAGAAAAAGAAAAGGCACTTCAAAATGCTGAATCAGAAGTCG
CTGCTTTGAACCGTCGTATTCAACTTTTGGAAGAAGACCTCGAACGTTCTGAAGAGCGTT
TGGCATCTGCTACCGCAAAGTTGTCAGAAGCATCAGCTGCTGCTGATGAATCTGAACGGT
AATGCCCGTAAAGTTCTTGAAAACCGTTCACTTGCCGATGAAGAGCGTATGGATGCTCTT
GAAAATCAATTGAAGGAAGCTCGCTTCCTCGCTGAAGAAGCTGACAAGAAATACGATGAG
GTTGCACGTAAATTAGCTATGGTTGAGGCTGATCTTGAACGTGCAGAAGAGCGTGCAGAA
GCTGGTGAAGCCAAAATTGTTGAACTTGAAGAAGAACTTCGCGTCGTCGGTAACAACTTG
AAGTCATTGGAAGTGTCAGAAGAGAAGGCAAATCAACGTGAAGAAGAATATAAGAATCAA
ATTAAGACTCTTACCACCCGCCTTAAGGAGGCTGAAGCCAGAGCCGAATTTGCTGAACGT
TCAGTTCAGAAATTGCAGAAAGAAGTCGACAGACTTGAAGATGAGCTTGTTTCCGAAAAG
GAGAAATACAGAGAAATTGGAGACGATCTCGATACCGCTTTTGTGGAACTCATCCTTAAG
GAATAAAGGATTTTCGGCCTACAAAAACATCAAAGCTTACAATGAAATGAACGTTTTACA
TAAATTTGAAAAACTCTTACTCTTCAAAATCTTTTTTCTAATTTATTAATTTTCCTTCAG
TTAACGCGCATCGATATACATATATTGTGGATAAGATCAAAGATAGAATTAGGAAAAATT
TATTCATATTAAGCATGTAAAGTTTATCATTTAAATATTACAACCAAGATCATAAGAGAT
ATAGAGATAAATGTAAAACTGCAAATAACATCAATCTGAAATCTCTCACTCTTGATCGAA
ATTGGGGTTTAGGAATAAAGTTAAAACGCCAACATCAGCGAACAAAATTTTTGATATATT
TTTTAATTTCAAAATGCAAAAATAAAAAGTTTCTTTTTAGAATGTTT
>g11466.t31 Gene=g11466 Length=145
MDALENQLKEARFLAEEADKKYDEVARKLAMVEADLERAEERAEAGEAKIVELEEELRVV
GNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKEAEARAEFAERSVQKLQKEVDRLEDEL
VSEKEKYREIGDDLDTAFVELILKE
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
10 | g11466.t31 | Coils | Coil | Coil | 1 | 133 | - |
9 | g11466.t31 | Gene3D | G3DSA:1.20.5.340 | - | 19 | 119 | 1.7E-23 |
2 | g11466.t31 | PANTHER | PTHR19269:SF45 | TROPOMYOSIN-1, ISOFORMS 33/34 | 1 | 142 | 4.1E-71 |
3 | g11466.t31 | PANTHER | PTHR19269 | TROPOMYOSIN | 1 | 142 | 4.1E-71 |
6 | g11466.t31 | PRINTS | PR00194 | Tropomyosin signature | 5 | 33 | 1.4E-38 |
5 | g11466.t31 | PRINTS | PR00194 | Tropomyosin signature | 35 | 58 | 1.4E-38 |
4 | g11466.t31 | PRINTS | PR00194 | Tropomyosin signature | 91 | 116 | 1.4E-38 |
1 | g11466.t31 | Pfam | PF00261 | Tropomyosin | 1 | 142 | 8.0E-60 |
8 | g11466.t31 | ProSitePatterns | PS00326 | Tropomyosins signature. | 92 | 100 | - |
7 | g11466.t31 | SUPERFAMILY | SSF57997 | Tropomyosin | 1 | 141 | 7.85E-48 |
IUPRED3 score over 0.5 is predictive of a disordered region.
There are no GO annotations for this transcript.
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed