Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_1 | g11474 | g11474.t94 | TTS | g11474.t94 | 16437300 | 16437300 |
chr_1 | g11474 | g11474.t94 | isoform | g11474.t94 | 16438007 | 16438722 |
chr_1 | g11474 | g11474.t94 | exon | g11474.t94.exon1 | 16438007 | 16438286 |
chr_1 | g11474 | g11474.t94 | cds | g11474.t94.CDS1 | 16438009 | 16438286 |
chr_1 | g11474 | g11474.t94 | exon | g11474.t94.exon2 | 16438516 | 16438722 |
chr_1 | g11474 | g11474.t94 | cds | g11474.t94.CDS2 | 16438516 | 16438633 |
chr_1 | g11474 | g11474.t94 | TSS | g11474.t94 | 16438988 | 16438988 |
>g11474.t94 Gene=g11474 Length=487
AGTTAAACGTCTCCTATCCCTCAACGGGAGCTCAGAAAACTTTTGAGGTCAACGATGACC
ACAAATTGCGATTGTTTTACGAGAAACGCATGGGCGCTGAAATTGAAGCTGATCAATTAG
GCGATGAATGGAAAGGATATATTCTTAAAATCGCTGGTGGTAATGATAAACAAGGTTTCC
CAATGAAACAGGGTGTTTTAACAAACACTCGTGTTCGTCTCTTGCTTAAAAAAGGACATT
CCTGTTATCGTCCAAGAAGAACTGGAGAACGTAAACGTAAATCAGTTCGTGGTTGCATTG
TTGATCAAAACTTGTCAGCTCTCGCTTTGATCGTCGTACGTAAGGGTGAGAGTGAAGTTG
AAGGTTTAACTGATGTCACCGTTCCTCGTCGTCTCGGACCTAAACGTGCAAGCCACATTC
GTAAACTGTTTGCTTTGACAAAAGAGGATGATGTTCGCAAGTATGTCATTAAGAAGCCTT
TGCCACC
>g11474.t94 Gene=g11474 Length=132
MGAEIEADQLGDEWKGYILKIAGGNDKQGFPMKQGVLTNTRVRLLLKKGHSCYRPRRTGE
RKRKSVRGCIVDQNLSALALIVVRKGESEVEGLTDVTVPRRLGPKRASHIRKLFALTKED
DVRKYVIKKPLP
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
2 | g11474.t94 | PANTHER | PTHR11502:SF6 | 40S RIBOSOMAL PROTEIN S6 | 1 | 131 | 5.9E-75 |
3 | g11474.t94 | PANTHER | PTHR11502 | 40S RIBOSOMAL PROTEIN S6 | 1 | 131 | 5.9E-75 |
1 | g11474.t94 | Pfam | PF01092 | Ribosomal protein S6e | 1 | 95 | 2.6E-45 |
5 | g11474.t94 | ProSitePatterns | PS00578 | Ribosomal protein S6e signature. | 21 | 32 | - |
4 | g11474.t94 | SMART | SM01405 | Ribosomal_S6e_2 | 1 | 95 | 2.9E-50 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005840 | ribosome | CC |
GO:0006412 | translation | BP |
GO:0003735 | structural constituent of ribosome | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.