General information for g11491.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Unconventional myosin IC.
Parent gene
- The parent gene g11491 is located on chr_1: 16598572..16599945 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11491 | g11491.t2 | isoform | g11491.t2 | 16593574 | 16596635 |
| chr_1 | g11491 | g11491.t2 | exon | g11491.t2.exon1 | 16593574 | 16593772 |
| chr_1 | g11491 | g11491.t2 | exon | g11491.t2.exon2 | 16593848 | 16593958 |
| chr_1 | g11491 | g11491.t2 | cds | g11491.t2.CDS1 | 16593888 | 16593958 |
| chr_1 | g11491 | g11491.t2 | exon | g11491.t2.exon3 | 16596147 | 16596199 |
| chr_1 | g11491 | g11491.t2 | cds | g11491.t2.CDS2 | 16596147 | 16596199 |
| chr_1 | g11491 | g11491.t2 | exon | g11491.t2.exon4 | 16596332 | 16596635 |
| chr_1 | g11491 | g11491.t2 | cds | g11491.t2.CDS3 | 16596332 | 16596564 |
| chr_1 | g11491 | g11491.t2 | TSS | g11491.t2 | NA | NA |
| chr_1 | g11491 | g11491.t2 | TTS | g11491.t2 | NA | NA |
Sequences
>g11491.t2 Gene=g11491 Length=667
TGTAAGTTAATGAAATCAACTTCAAATCATTTAAGTATATTCAATAATTTTTTTAGTATC
AAACATCTTGCATGAAATATGACCGTCGCGGATATAAGCCACGAGAGAGAATTTTAATCA
TTGGTGATAAAAGTTTGTTCTTGATTGATGCAAAAACTTACAAACAAAAACACCGCATTA
GTCTGAATAAAATTCCCAACATTGTATTAACAAAAGAAGGTGATAATTTGCTACTAGTAA
GAATTCCACTTGAGTTGAAAAAAGATAAGGGTGATTTGATTCTTGACGTGCCATACATTA
TTGAATTCTCACATAATATGACTTCAGGAAAGAGTGGTGTGATTCAAGTTGAATTAGTTA
CTACAAGAAAATTTAATTCTCATGTTATACATATAAGTTTCTTAATTGATAACTCAGTCA
TAAGTTAAAAAACTTTGTAGAGAAAAGCCCCTTGAATCATCTCATGCTACACTAAAATTA
GCTCACATAACATATGAGAAATGATGGTCAGAATAAATCCACTGTTTCGACATTTTTAAT
ACATTTTGACACTGAGAATTCTCTTACTCATAAATTTCCCATTAAATATTTCAACATAAA
TCACGTATTAAAGCGATAATTAAATTATTCAAATAGAATGAAATGAAAATGAAAATTTGT
CACCAAA
>g11491.t2 Gene=g11491 Length=118
MKYDRRGYKPRERILIIGDKSLFLIDAKTYKQKHRISLNKIPNIVLTKEGDNLLLVRIPL
ELKKDKGDLILDVPYIIEFSHNMTSGKSGVIQVELVTTRKFNSHVIHISFLIDNSVIS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11491.t2 | Pfam | PF06017 | Unconventional myosin tail, actin- and lipid-binding | 2 | 97 | 0.000 |
| g11491.t2 | ProSiteProfiles | PS51757 | Class I myosin tail homology (TH1) domain profile. | 1 | 118 | 14.377 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed