Gene loci information

Transcript annotation

  • This transcript has been annotated as Cell division cycle protein 27-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11493 g11493.t1 TSS g11493.t1 16611079 16611079
chr_1 g11493 g11493.t1 isoform g11493.t1 16611172 16614050
chr_1 g11493 g11493.t1 exon g11493.t1.exon1 16611172 16611195
chr_1 g11493 g11493.t1 cds g11493.t1.CDS1 16611172 16611195
chr_1 g11493 g11493.t1 exon g11493.t1.exon2 16611268 16611343
chr_1 g11493 g11493.t1 cds g11493.t1.CDS2 16611268 16611343
chr_1 g11493 g11493.t1 exon g11493.t1.exon3 16611411 16611558
chr_1 g11493 g11493.t1 cds g11493.t1.CDS3 16611411 16611558
chr_1 g11493 g11493.t1 exon g11493.t1.exon4 16611636 16613312
chr_1 g11493 g11493.t1 cds g11493.t1.CDS4 16611636 16613312
chr_1 g11493 g11493.t1 exon g11493.t1.exon5 16613384 16613769
chr_1 g11493 g11493.t1 cds g11493.t1.CDS5 16613384 16613769
chr_1 g11493 g11493.t1 exon g11493.t1.exon6 16613824 16614050
chr_1 g11493 g11493.t1 cds g11493.t1.CDS6 16613824 16614050
chr_1 g11493 g11493.t1 TTS g11493.t1 16615014 16615014

Sequences

>g11493.t1 Gene=g11493 Length=2538
ATGTTAATTCAAGAACCTGTGCAGGTTGCTATTTGGACAAATTTAAATTTTTATGCTTTT
GAAGATGCAATTTTCTTGGCTGAACGATTACTTGCTGAAGTCGAGACGGATGAAAGTTTA
TATCTGCTTGCAACTTGTTATTATCGATCGGGAAGAACTAACGAAGCATATTGGCTACTA
AACACAAAAGGAGCATCTACACACAAGTCAAAGTTTCTTTTAGCAAAATGTGCATATGAG
TTAAAGCATTTTACAGAAGCAGAAAACATTTTATGTAATAATAGGACCCCGAAGACTCAA
AAAGATCTAGATGCAATTTCCAAAGAATATGGAATTGAATTGAGTGGTTTTGTAATGCAA
TTAATGTCAAAAATTTGCCAAAAAACTGAAAGGATTTCATTAGCCAATGATTGCTGTCGA
GAGTCATTAAAAAATAATCCATTTTTATGGCAGTCATTTAATGATTTGTGTAATCGTGGA
GAACGACCAAATGTGAAAGATATCTTTCAAATTAGAAATGATGAATTATTAGTTCAACTA
GAAAATCAATTGCTGTATGTGTCTAATGCATGTCCAGATCGCAATACAAATTTTAATGAT
AAGAATATCAGTATTTCTGGATCACAGTTGAATTGTATTACAACACCAAACAACATTATG
ACTACAGCGCATCATTTTAATGTAAATACAACAGAAGATACACCCTTAATAGAGAACCAA
TCAGTCGTTGGAATGCAATATTTTGATGTAGAAACACCTTATCGTAAGCAGTTCAAATAT
CTTAATTCAAACTATAGTCCCGTTACACCTAGTTTTGGAGTACTACCACTGAATAGTCCC
GGAAACGACAATTTAAAACAAACGACTCTATTTATTACACCATCACCACCACTGCAACAA
AATCAACAATCTCAATTGATGGATTCAGATAAGAATATTAGCAATAAGAAAATTAGAGGA
AATTTAAATTCATTAGTTAATCGAAAAGAAATTCCAACAACTCCTCTACAACAAACTCAA
CATACGAAACAAGTTGTCTTGAATCAATCTAGTAATATTTCGTCTCCTAATCGTACTCCT
CAAGAACAACGGAATCAACAGAATGTTCGTAGATCTTCACGAATATTTAGCAATTACTCG
GTTAAAGAAAATAATAAGTCACCGAAATTCGCTAAATTCGTGCAACCACGTTCTCCTCCG
CGAAAAACTAGCAAAAGAGTTTCTAAATCAACAAAATCGACTTTAAATGAGTTGAATGAA
AAAAATACAATATTGAATGAGAAAGAAAAAATTGAAACAATCACATCAGCGCAAGTGAAA
ACTAATGACATAAGTTCATTTCAAAATGGACAATATAATATAAGTTCAATGAAACGTCAA
AGTGCTGATGGATTAATGATTTTACTTCAGTCATTGGGTGAGGCATATTTGCATTTGCAA
CATTATGAGTTAGATGAAGCATTAGAAGTACTTGAGACAAAAGTACCTATACATCATTTC
AATAGCAGTTGGGTTCAATCAATAATAGCTTTAATTCATCATGAAAAACGCGAATACGAG
CAAGCTGTAAAAATATTTTCAAACATCCGAAAGAACGAGCCCTATCGATTACAATATATG
GAAATTTATAGCACAGATTTATGGCATCTACAAAAGGAAACTTTATTATCGATTTTAGCA
CAGGACTTAATGCAACATAGTAAAAACTCGGCAATCACATGGTGTGTCGCAGGAAACTGT
TTTTCCGCTTTAAAAGAGCATGATACTGCAATTAAATTTTTTAATCGAGCTATTCAACTT
GATCCAGAATTTCCATATTCATATACATTACTTGGTCACGAATTGGTGGTAACTGAGGAA
TTAGAAAAAGCATTAGGATGCTATCGAAAAGCTATTCTTAAAGATTCACGTCATTACAAT
GCATGGTTTGGAATTGGTACAATTTACTCAAAACAAGAGCGTTTTCAGCTTGCAGAAATT
CATTTTCGTCATGCTTTGAAAATCAATCGGAAAAATTCAGTCATTTTGGTTCACATAGGT
GTAATGCAATTTTATTTGAACAAACGTGATCAAGCAATTCAAACTTTATTGGATGCAATA
AAATTAGATCCAAAAGATCCACTGAGTAAATTCCATCATGCATCAATGAATTTCAAGATG
GGAAAATTGCAAGAAGCGCTTGAAGAGCTCAAAGAATTAAAACAAATCGTGCCAAAAGAA
TCTGTAGTGTTTTATCTAATAGGCAAAATCCATAAACAATTAGGAAATATAGATCTCGCA
TTGATGCATTTCAGTTGGGCGACTGATTTAGATCCAAAAGGAGCCAATAATCAGATAAAG
GACAAATTCGATTCAGTCATAAGATCTCATCAACAACCAGAACAATCAGATGGTGATATG
AGGTCACGAGAAGATTTTGATGAAGATGACGATGTTTCCCTAGATGAGGACGAAATTGAT
GCAACTGCATCTAATGATAATAACAATAGCAGTGGTGGACTAGAAGAGTCTGAGATTAGC
ATGAATCAAGATCATTAA

>g11493.t1 Gene=g11493 Length=845
MLIQEPVQVAIWTNLNFYAFEDAIFLAERLLAEVETDESLYLLATCYYRSGRTNEAYWLL
NTKGASTHKSKFLLAKCAYELKHFTEAENILCNNRTPKTQKDLDAISKEYGIELSGFVMQ
LMSKICQKTERISLANDCCRESLKNNPFLWQSFNDLCNRGERPNVKDIFQIRNDELLVQL
ENQLLYVSNACPDRNTNFNDKNISISGSQLNCITTPNNIMTTAHHFNVNTTEDTPLIENQ
SVVGMQYFDVETPYRKQFKYLNSNYSPVTPSFGVLPLNSPGNDNLKQTTLFITPSPPLQQ
NQQSQLMDSDKNISNKKIRGNLNSLVNRKEIPTTPLQQTQHTKQVVLNQSSNISSPNRTP
QEQRNQQNVRRSSRIFSNYSVKENNKSPKFAKFVQPRSPPRKTSKRVSKSTKSTLNELNE
KNTILNEKEKIETITSAQVKTNDISSFQNGQYNISSMKRQSADGLMILLQSLGEAYLHLQ
HYELDEALEVLETKVPIHHFNSSWVQSIIALIHHEKREYEQAVKIFSNIRKNEPYRLQYM
EIYSTDLWHLQKETLLSILAQDLMQHSKNSAITWCVAGNCFSALKEHDTAIKFFNRAIQL
DPEFPYSYTLLGHELVVTEELEKALGCYRKAILKDSRHYNAWFGIGTIYSKQERFQLAEI
HFRHALKINRKNSVILVHIGVMQFYLNKRDQAIQTLLDAIKLDPKDPLSKFHHASMNFKM
GKLQEALEELKELKQIVPKESVVFYLIGKIHKQLGNIDLALMHFSWATDLDPKGANNQIK
DKFDSVIRSHQQPEQSDGDMRSREDFDEDDDVSLDEDEIDATASNDNNNSSGGLEESEIS
MNQDH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g11493.t1 Coils Coil Coil 716 736 -
11 g11493.t1 Gene3D G3DSA:1.25.40.10 - 1 172 6.0E-39
12 g11493.t1 Gene3D G3DSA:1.25.40.10 - 458 535 2.1E-18
10 g11493.t1 Gene3D G3DSA:1.25.40.10 - 536 668 9.5E-45
9 g11493.t1 Gene3D G3DSA:1.25.40.10 - 669 772 6.5E-27
24 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 298 326 -
22 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 350 415 -
26 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 350 385 -
21 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 786 802 -
27 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 786 845 -
23 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 803 822 -
25 g11493.t1 MobiDBLite mobidb-lite consensus disorder prediction 823 838 -
5 g11493.t1 PANTHER PTHR12558 CELL DIVISION CYCLE 16,23,27 6 783 1.9E-105
6 g11493.t1 PANTHER PTHR12558:SF13 CELL DIVISION CYCLE PROTEIN 27 HOMOLOG 6 783 1.9E-105
4 g11493.t1 Pfam PF12895 Anaphase-promoting complex, cyclosome, subunit 3 19 92 9.0E-18
1 g11493.t1 Pfam PF00515 Tetratricopeptide repeat 571 604 4.8E-7
2 g11493.t1 Pfam PF13432 Tetratricopeptide repeat 611 668 1.2E-4
3 g11493.t1 Pfam PF13181 Tetratricopeptide repeat 676 706 0.065
35 g11493.t1 ProSiteProfiles PS50293 TPR repeat region circular profile. 466 774 42.575
29 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 503 536 6.579
34 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 571 604 11.21
32 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 605 638 7.877
31 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 639 672 9.853
30 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 673 706 9.588
33 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 707 740 6.431
28 g11493.t1 ProSiteProfiles PS50005 TPR repeat profile. 741 774 9.647
15 g11493.t1 SMART SM00028 tpr_5 503 536 94.0
20 g11493.t1 SMART SM00028 tpr_5 571 604 3.4E-6
18 g11493.t1 SMART SM00028 tpr_5 605 638 0.26
17 g11493.t1 SMART SM00028 tpr_5 639 672 1.3E-5
16 g11493.t1 SMART SM00028 tpr_5 673 706 0.12
19 g11493.t1 SMART SM00028 tpr_5 707 740 460.0
14 g11493.t1 SMART SM00028 tpr_5 741 774 0.03
8 g11493.t1 SUPERFAMILY SSF48452 TPR-like 35 534 5.61E-20
7 g11493.t1 SUPERFAMILY SSF48452 TPR-like 569 774 2.28E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values