General information for g11493.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cell division cycle protein 27-like protein.
Parent gene
- The parent gene g11493 is located on chr_1: 16612671..16614050 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11493 | g11493.t2 | TSS | g11493.t2 | 16611079 | 16611079 |
| chr_1 | g11493 | g11493.t2 | isoform | g11493.t2 | 16611172 | 16612671 |
| chr_1 | g11493 | g11493.t2 | exon | g11493.t2.exon1 | 16611172 | 16611195 |
| chr_1 | g11493 | g11493.t2 | cds | g11493.t2.CDS1 | 16611172 | 16611195 |
| chr_1 | g11493 | g11493.t2 | exon | g11493.t2.exon2 | 16611268 | 16611343 |
| chr_1 | g11493 | g11493.t2 | cds | g11493.t2.CDS2 | 16611268 | 16611343 |
| chr_1 | g11493 | g11493.t2 | exon | g11493.t2.exon3 | 16611411 | 16611558 |
| chr_1 | g11493 | g11493.t2 | cds | g11493.t2.CDS3 | 16611411 | 16611558 |
| chr_1 | g11493 | g11493.t2 | exon | g11493.t2.exon4 | 16611636 | 16612671 |
| chr_1 | g11493 | g11493.t2 | cds | g11493.t2.CDS4 | 16611636 | 16612671 |
| chr_1 | g11493 | g11493.t2 | TTS | g11493.t2 | NA | NA |
Sequences
>g11493.t2 Gene=g11493 Length=1284
ATGTTAATTCAAGAACCTGTGCAGGTTGCTATTTGGACAAATTTAAATTTTTATGCTTTT
GAAGATGCAATTTTCTTGGCTGAACGATTACTTGCTGAAGTCGAGACGGATGAAAGTTTA
TATCTGCTTGCAACTTGTTATTATCGATCGGGAAGAACTAACGAAGCATATTGGCTACTA
AACACAAAAGGAGCATCTACACACAAGTCAAAGTTTCTTTTAGCAAAATGTGCATATGAG
TTAAAGCATTTTACAGAAGCAGAAAACATTTTATGTAATAATAGGACCCCGAAGACTCAA
AAAGATCTAGATGCAATTTCCAAAGAATATGGAATTGAATTGAGTGGTTTTGTAATGCAA
TTAATGTCAAAAATTTGCCAAAAAACTGAAAGGATTTCATTAGCCAATGATTGCTGTCGA
GAGTCATTAAAAAATAATCCATTTTTATGGCAGTCATTTAATGATTTGTGTAATCGTGGA
GAACGACCAAATGTGAAAGATATCTTTCAAATTAGAAATGATGAATTATTAGTTCAACTA
GAAAATCAATTGCTGTATGTGTCTAATGCATGTCCAGATCGCAATACAAATTTTAATGAT
AAGAATATCAGTATTTCTGGATCACAGTTGAATTGTATTACAACACCAAACAACATTATG
ACTACAGCGCATCATTTTAATGTAAATACAACAGAAGATACACCCTTAATAGAGAACCAA
TCAGTCGTTGGAATGCAATATTTTGATGTAGAAACACCTTATCGTAAGCAGTTCAAATAT
CTTAATTCAAACTATAGTCCCGTTACACCTAGTTTTGGAGTACTACCACTGAATAGTCCC
GGAAACGACAATTTAAAACAAACGACTCTATTTATTACACCATCACCACCACTGCAACAA
AATCAACAATCTCAATTGATGGATTCAGATAAGAATATTAGCAATAAGAAAATTAGAGGA
AATTTAAATTCATTAGTTAATCGAAAAGAAATTCCAACAACTCCTCTACAACAAACTCAA
CATACGAAACAAGTTGTCTTGAATCAATCTAGTAATATTTCGTCTCCTAATCGTACTCCT
CAAGAACAACGGAATCAACAGAATGTTCGTAGATCTTCACGAATATTTAGCAATTACTCG
GTTAAAGAAAATAATAAGTCACCGAAATTCGCTAAATTCGTGCAACCACGTTCTCCTCCG
CGAAAAACTAGCAAAAGAGTTTCTAAATCAACAAAATCGACTTTAAATGAGTTGAATGAA
AAAAATACAATATTGAATGAGAAA
>g11493.t2 Gene=g11493 Length=428
MLIQEPVQVAIWTNLNFYAFEDAIFLAERLLAEVETDESLYLLATCYYRSGRTNEAYWLL
NTKGASTHKSKFLLAKCAYELKHFTEAENILCNNRTPKTQKDLDAISKEYGIELSGFVMQ
LMSKICQKTERISLANDCCRESLKNNPFLWQSFNDLCNRGERPNVKDIFQIRNDELLVQL
ENQLLYVSNACPDRNTNFNDKNISISGSQLNCITTPNNIMTTAHHFNVNTTEDTPLIENQ
SVVGMQYFDVETPYRKQFKYLNSNYSPVTPSFGVLPLNSPGNDNLKQTTLFITPSPPLQQ
NQQSQLMDSDKNISNKKIRGNLNSLVNRKEIPTTPLQQTQHTKQVVLNQSSNISSPNRTP
QEQRNQQNVRRSSRIFSNYSVKENNKSPKFAKFVQPRSPPRKTSKRVSKSTKSTLNELNE
KNTILNEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11493.t2 | Gene3D | G3DSA:1.25.40.10 | - | 1 | 172 | 1.6E-39 |
| 4 | g11493.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 326 | - |
| 5 | g11493.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 428 | - |
| 6 | g11493.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 385 | - |
| 3 | g11493.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 428 | - |
| 1 | g11493.t2 | Pfam | PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 | 19 | 92 | 3.4E-18 |
| 2 | g11493.t2 | SUPERFAMILY | SSF48452 | TPR-like | 35 | 169 | 2.98E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
