General information for g11495.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proteasome subunit alpha type-3.
Parent gene
- The parent gene g11495 is located on chr_1: 16626368..16627254 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11495 | g11495.t2 | TSS | g11495.t2 | 16626322 | 16626322 |
| chr_1 | g11495 | g11495.t2 | isoform | g11495.t2 | 16626324 | 16627254 |
| chr_1 | g11495 | g11495.t2 | exon | g11495.t2.exon1 | 16626324 | 16627254 |
| chr_1 | g11495 | g11495.t2 | cds | g11495.t2.CDS1 | 16626934 | 16627254 |
| chr_1 | g11495 | g11495.t2 | TTS | g11495.t2 | 16627359 | 16627359 |
Sequences
>g11495.t2 Gene=g11495 Length=931
TTTATAGAGAGAAAAATAAACAAATTTCGCAAAAATTTATAAAAATGAGTTCAATTGGTA
CAGGAGTAAGTTTCTTGTAGTTTAATTTTATTATTAATGTTTTAAGCTACTGTTTAATTA
CAGTATGATTTGAGTGCAAGTCAATTTTCGCCGGATGGTCGAGTTTTTCAAGTCGAATAT
GCAATGAAAGCTGCTGAAATTTCCGGCACTGCTATTGGTTTAAGAGGGAAAGATGGTTGT
ATTTTAGCAGTAGAAAAAGTCATAACTAGCAAATTGCACGAACCTGATTCGGGCAGAAGA
ATCTTTACGATTGAAAACTCAATAGGAATGGTAATATAAAAATTGTTTGAATAAGGTTAC
AAGACGATGACTCTTCACTTTTGCATTATTTCAGGTAATTTGCGGTCTCATTACAGACGG
ACGCGCAATTGTAAATTATGCATTGAAAGAAGCTCAAAATTATCGCAGAGAGTATGGACA
AACTATTCCATTGAAGATTTTGAATGAGAGACTCTCTAGCTTATTTCATGCATATACACT
ATACAGTGCAGTTCGACCTTATGGCATTTGCATTATTCTCACAACATGGACTGAGCAAAA
TGGTGCTGAAATGTATTGTATTGAACCATCAGGCGTTTCTTTTGGATATTATGGATGCGC
CACAGGAAAAGCAAAACAAGCCGCTAAAACTGAAATCGAAAAGCTTAAACTGAATACACT
TACAGCTCGTGAGTTATTAAATGAAGGAGCGAAAATTATTTATCGTGTGAACGAAGATTC
AAGCGATAGTGATACAAAATTCAAGCTAGAATTATCATGGGTTGGAAAAGACACAAATGG
AATTCATCAAATCTGTCCGGTCAATTTATATGAAGAAGCGAAAGCAGCTGCAACTGCTGC
AATGGAACAAGGTGACAGTGATGTTGAATAA
>g11495.t2 Gene=g11495 Length=106
MYCIEPSGVSFGYYGCATGKAKQAAKTEIEKLKLNTLTARELLNEGAKIIYRVNEDSSDS
DTKFKLELSWVGKDTNGIHQICPVNLYEEAKAAATAAMEQGDSDVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11495.t2 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 106 | 0.0e+00 |
| 2 | g11495.t2 | PANTHER | PTHR11599:SF10 | PROTEASOME SUBUNIT ALPHA TYPE-3 | 1 | 102 | 0.0e+00 |
| 3 | g11495.t2 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 102 | 0.0e+00 |
| 1 | g11495.t2 | Pfam | PF00227 | Proteasome subunit | 2 | 65 | 1.2e-06 |
| 4 | g11495.t2 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 93 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
