General information for g11495.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Proteasome subunit alpha type-3.
Parent gene
- The parent gene g11495 is located on chr_1: 16626368..16627254 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11495 | g11495.t3 | TSS | g11495.t3 | 16626322 | 16626322 |
| chr_1 | g11495 | g11495.t3 | isoform | g11495.t3 | 16626368 | 16627254 |
| chr_1 | g11495 | g11495.t3 | exon | g11495.t3.exon1 | 16626368 | 16626380 |
| chr_1 | g11495 | g11495.t3 | exon | g11495.t3.exon2 | 16626447 | 16626653 |
| chr_1 | g11495 | g11495.t3 | cds | g11495.t3.CDS1 | 16626507 | 16626653 |
| chr_1 | g11495 | g11495.t3 | exon | g11495.t3.exon3 | 16626718 | 16627254 |
| chr_1 | g11495 | g11495.t3 | cds | g11495.t3.CDS2 | 16626718 | 16627254 |
| chr_1 | g11495 | g11495.t3 | TTS | g11495.t3 | 16627359 | 16627359 |
Sequences
>g11495.t3 Gene=g11495 Length=757
ATGAGTTCAATTGTATGATTTGAGTGCAAGTCAATTTTCGCCGGATGGTCGAGTTTTTCA
AGTCGAATATGCAATGAAAGCTGCTGAAATTTCCGGCACTGCTATTGGTTTAAGAGGGAA
AGATGGTTGTATTTTAGCAGTAGAAAAAGTCATAACTAGCAAATTGCACGAACCTGATTC
GGGCAGAAGAATCTTTACGATTGAAAACTCAATAGGAATGGTAATTTGCGGTCTCATTAC
AGACGGACGCGCAATTGTAAATTATGCATTGAAAGAAGCTCAAAATTATCGCAGAGAGTA
TGGACAAACTATTCCATTGAAGATTTTGAATGAGAGACTCTCTAGCTTATTTCATGCATA
TACACTATACAGTGCAGTTCGACCTTATGGCATTTGCATTATTCTCACAACATGGACTGA
GCAAAATGGTGCTGAAATGTATTGTATTGAACCATCAGGCGTTTCTTTTGGATATTATGG
ATGCGCCACAGGAAAAGCAAAACAAGCCGCTAAAACTGAAATCGAAAAGCTTAAACTGAA
TACACTTACAGCTCGTGAGTTATTAAATGAAGGAGCGAAAATTATTTATCGTGTGAACGA
AGATTCAAGCGATAGTGATACAAAATTCAAGCTAGAATTATCATGGGTTGGAAAAGACAC
AAATGGAATTCATCAAATCTGTCCGGTCAATTTATATGAAGAAGCGAAAGCAGCTGCAAC
TGCTGCAATGGAACAAGGTGACAGTGATGTTGAATAA
>g11495.t3 Gene=g11495 Length=227
MKAAEISGTAIGLRGKDGCILAVEKVITSKLHEPDSGRRIFTIENSIGMVICGLITDGRA
IVNYALKEAQNYRREYGQTIPLKILNERLSSLFHAYTLYSAVRPYGICIILTTWTEQNGA
EMYCIEPSGVSFGYYGCATGKAKQAAKTEIEKLKLNTLTARELLNEGAKIIYRVNEDSSD
SDTKFKLELSWVGKDTNGIHQICPVNLYEEAKAAATAAMEQGDSDVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11495.t3 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 227 | 0.000 |
| 2 | g11495.t3 | PANTHER | PTHR11599:SF10 | PROTEASOME SUBUNIT ALPHA TYPE-3 | 1 | 223 | 0.000 |
| 3 | g11495.t3 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 223 | 0.000 |
| 1 | g11495.t3 | Pfam | PF00227 | Proteasome subunit | 8 | 185 | 0.000 |
| 6 | g11495.t3 | ProSiteProfiles | PS51475 | Proteasome alpha-type subunit profile. | 1 | 212 | 54.054 |
| 4 | g11495.t3 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 1 | 202 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
