Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g115 g115.t6 TTS g115.t6 996357 996357
chr_3 g115 g115.t6 isoform g115.t6 996419 1001365
chr_3 g115 g115.t6 exon g115.t6.exon1 996419 996694
chr_3 g115 g115.t6 cds g115.t6.CDS1 996419 996694
chr_3 g115 g115.t6 exon g115.t6.exon2 998503 998633
chr_3 g115 g115.t6 cds g115.t6.CDS2 998503 998633
chr_3 g115 g115.t6 exon g115.t6.exon3 998702 998992
chr_3 g115 g115.t6 cds g115.t6.CDS3 998702 998969
chr_3 g115 g115.t6 exon g115.t6.exon4 1001143 1001365
chr_3 g115 g115.t6 TSS g115.t6 1001365 1001365

Sequences

>g115.t6 Gene=g115 Length=921
GTTGCTGTCAAACCATTGAATCAAGTGAATGTGAAAAATATTTCATAGCTAAAAATCGGC
ATTTTAAATGTCAAATCAATTAATAATTTATCTTCATACAAGTGATCAGTTGTTTTTTAA
ATAATTATAGAAAAAAATAATTTTTTTGGGAAAATTTCATGAAATTGAGAAATGAAAAAT
TAAAGGAAAAAAAACAACTGTGGAAAAAGTTTGATTTTTTAAGAAAGAGCATACAAAATA
AAAAAAATGGCACCAGAAATAATGCAACCATCAAATCAGTCACAAAATGATAAAAATATT
ATACATCGTGTAAGCACAAATAAATTAGATGACAATCACAATTACAATCATGCAAATGGA
AATGGAAAAGTCGAAGCAGAAAATTCTCATGAAGTATTTAAGCCAAAAATACGATGGCCA
GATTTTATAGTGCAATTATCATTACATATTGGATTTTTGTATGGTCTCTATTACTTAATC
GCACTAAAAGCAAAATTCTACACATACATTTGGTTCTTTGTCCTCATTTATGTAACAGGT
TTAGGTATTACAGCCGGTGCGCATCGTCTATGGAGTCATCGTTCATACAAAGCAAAACTT
CCATTGCGTGTCCTTCTTTTGATATTTTTCACAATTGCTGGACAGGTCTTTCCCTATGAT
TATAAAACTGGTGAATTTGGTGGATGGCAAGGATATAAATTTAATATCACAACAGCTCAC
ATTGACTTTTTTGCTAAAATTGGCTGGGCTTATGATCGAAAATATGCAAGTGCTGAAATG
ATTGCAAGAAAAGTTGCAAAATCAGGCGATGGAAGTCATTTTTTATCACATGAAGAAGCA
CACAAAACTTCAATTTATGGTTATGGTGATAAAGATCTTGAAATTGAAGATGCTAAAGCA
TTAGAAAATTTAAAAGAATGA

>g115.t6 Gene=g115 Length=224
MAPEIMQPSNQSQNDKNIIHRVSTNKLDDNHNYNHANGNGKVEAENSHEVFKPKIRWPDF
IVQLSLHIGFLYGLYYLIALKAKFYTYIWFFVLIYVTGLGITAGAHRLWSHRSYKAKLPL
RVLLLIFFTIAGQVFPYDYKTGEFGGWQGYKFNITTAHIDFFAKIGWAYDRKYASAEMIA
RKVAKSGDGSHFLSHEEAHKTSIYGYGDKDLEIEDAKALENLKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g115.t6 Coils Coil Coil 216 224 -
2 g115.t6 PANTHER PTHR11351 ACYL-COA DESATURASE 13 133 5.6E-72
4 g115.t6 PANTHER PTHR11351:SF61 RH14937P 13 133 5.6E-72
1 g115.t6 PANTHER PTHR11351 ACYL-COA DESATURASE 134 222 5.6E-72
3 g115.t6 PANTHER PTHR11351:SF61 RH14937P 134 222 5.6E-72
6 g115.t6 PRINTS PR00075 Fatty acid desaturase family 1 signature 57 77 4.0E-12
5 g115.t6 PRINTS PR00075 Fatty acid desaturase family 1 signature 106 126 4.0E-12
11 g115.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 59 -
15 g115.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 60 78 -
14 g115.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 79 83 -
16 g115.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 84 106 -
12 g115.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 107 117 -
17 g115.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 118 137 -
13 g115.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 138 224 -
8 g115.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 60 79 -
7 g115.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 84 106 -
9 g115.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 118 137 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values