General information for g11523.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.
Parent gene
- The parent gene g11523 is located on chr_1: 16789143..16797471 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11523 | g11523.t1 | TSS | g11523.t1 | 16788486 | 16788486 |
| chr_1 | g11523 | g11523.t1 | isoform | g11523.t1 | 16789143 | 16797471 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon1 | 16789143 | 16789241 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS1 | 16789143 | 16789241 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon2 | 16789325 | 16789410 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS2 | 16789325 | 16789410 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon3 | 16791704 | 16792012 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS3 | 16791704 | 16792012 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon4 | 16792323 | 16792594 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS4 | 16792323 | 16792594 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon5 | 16792736 | 16792859 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS5 | 16792736 | 16792859 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon6 | 16793647 | 16794001 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS6 | 16793647 | 16794001 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon7 | 16794098 | 16795567 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS7 | 16794098 | 16795567 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon8 | 16795622 | 16795778 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS8 | 16795622 | 16795778 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon9 | 16795908 | 16796060 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS9 | 16795908 | 16796060 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon10 | 16796152 | 16796424 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS10 | 16796152 | 16796424 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon11 | 16796505 | 16796616 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS11 | 16796505 | 16796616 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon12 | 16796702 | 16797024 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS12 | 16796702 | 16797024 |
| chr_1 | g11523 | g11523.t1 | exon | g11523.t1.exon13 | 16797098 | 16797471 |
| chr_1 | g11523 | g11523.t1 | cds | g11523.t1.CDS13 | 16797098 | 16797471 |
| chr_1 | g11523 | g11523.t1 | TTS | g11523.t1 | 16797551 | 16797551 |
Sequences
>g11523.t1 Gene=g11523 Length=4107
ATGGACTATTCAAAAAAGCCAACGAAAAAAAATCCAAGAAATGGAGCGTTGGCTTTATCA
CAATTATTTTTTCTCTGGACAATACCGACAATGCTTCGAGGATGCTTTTACGGTCTGAAT
CGTGAGGACTTAACAAAATGTTTGAAGAAAGATCGTTCACAAGATCTGGGTGAAAAGCTT
GAAGTAGAGTGGGAAAAAGAGTTGGAACAAGCGAGGAAAAAGAACCGAAAACCACAATTT
AGGAATGCGCTTTTTCACACATTCTGGAGAAGTTGTGTTGTAGATGGCATGTTAGTGTTC
ATATTCGTTCTCTTGAAATCAATTGGTCCAGTATTTTTTTCTCAACTTTTGCTGCAATTT
CAAGAACCACAAAATGCAATTATAAATGACTCGTCATCAAATTTTAATGAAACTGTCGAA
TTATCAAATACCACAACGCCGCTACCATCAACATTCAATTCAAATGACTTTCTTCAATAT
ATGGAGTATATTTGGACTGACGTATATTGGATGGCGACAATAGTTATATTAATTACCTTT
ATCTCCTGCATCATTGGTCATCACATGGACTTGCGACAGAGAATGGTCGGTGCTCGAATG
CGCATTGCTTGTTCAGCAGCAATTTATCGTAAATCATTGCGAATGTCAAAGAGAGCCGTT
ACGCAAACATCTGCTGGAAACATTGTAAATCTTCTATCGAATGATGTGAGCCGTTTAGAT
TATGGGTTCATTTTTGTCCATTTCATCTGGATATTGCCATTTCAAGCCAGCTTAATTTGT
TATTTAATATGGAGAGAAGTGAAATACGCTGCAATAGTTGGTGTGCTTGGATTGATAATA
AAAACAGTTCCAATTCAAACTGGATTATCAAAAATTTCCTCGATTCTAAGAATGCGAATA
GCAATAAGAACCGACAATCGTGTATCCATTATGAATGAACTCATTCAGGGAATACAAGTA
ATCAAAATGTATGCATGGGAGACGCCTTTCAGAAATGTTGTTAAGCTGGCACGAAATAAA
GAGGTGGATCAAATTCAGAAGGCGCAATATATAAGAGGCATATATTTGTCAACTATGGTT
TTTACTGAACGTTCTACACTTTTTTTGGCCATTCTCGCATGCATATTGGAAGGACGTGCG
ATCACAGCTGATTTAGTGTTTTCGATGGCAACATTTTTTAACGTCCTTCAATTGACGGCA
GCAATATTTTATCCACTAGCAGTATCGTTAGGAGCTGAAGCATTGGTCTCTATAAAAAGA
ATTCAAGATTTTTTGAGTTTAGAGGAGCAAGATTCAGCAATGCCTGGCTTACATCAAAAT
AAAATAGAAGTAATTGAATCAGAAACGAATGTCATCGAGATGATTAATGTCGACGCTACA
TGGACAAATGATTATCGTTGTAAAACTTTGTCGAATCTCAATATTAAAGTAAAAGCAGGA
AAACTCTGTGCAATCATTGGTCATGTCGGAAGTGGAAAAAGCTCAATTTTTCAGCTTCTA
CTTGGCGAACTTTCAATTTACTCAGGTGACGTTGTTATAAATGGTGAATTGTCATATGCC
TCTCAGGATCCATGGTTATTTTCTGCATCAATAAAGAACAACATTCTTTTTGGATTACAA
TACAATAAGACTCGTTATCAGGACGTTATAAAGCATTGTGCACTTGCTACAGATTTCCAA
CAGTTACAATATGGTGATAAAACTTTCGTTGGTGAACGAGGGTGCGCACTTTCGGGAGGT
CAAAGAGCACGCGTGAGTCTCGCTCGTGCAGTTTATAGAAATGCATCAATTTATCTCCTC
GATGATCCGCTATCTGCAGTAGACGCTCAAGTTGGACAACATATTTTCAATGAATGTATT
GGTCCACATGGTTATCTTGCACGACAGAGGGCAACGAGAATTTTGATTACACATCAGGTG
CATTTTTTGAAGGAAGCAGATTGGATTGTTGTTATGGATCAAGGTAGAATTATTAGGCAA
GGTACATGGAACGATGTAATGGATATTGACATTTCACAATATGTTCTTTCACTCGAAACA
AAAGAACAAAGCAGTGATGATGATTTGGATGAAAAAGAATCTAAAATGAATTTAACCAAT
GACATCGACGATATTCCATATATTGATGACGTGCCAGAGAGCAATAATGGTTACATAAAG
CTTAGAGCAACAGATTTAAAGAAATCACTGTCACGTGCTTCAAGTGCCAATAGTGTTGAG
GAAAATCTTGAGCTTATCGAGCAAACTGAAGCACGCGATGAAGAGAAAAGCACCCAGAAC
ATTCACTTTATAAAAGTTTTTTATGAATATTTTCGTGCTGGGGCAAGTCCTTTAGTGTTG
CTCTCAATTGTCATTTATTTACTCTTCTCACAAGCAGTGACTTCCGGAAGCGATTTTTTC
CTTACATTTTGGACAAATCAAGAGCTATTACGCTTACATGGTGGGAAGACAGTCATCGAA
ACAACAGATGGCCTTTATATTTATGGATTTTTAATACTTGCTGTCATCTTTGTTACCATG
TCGCGCGGCTTCATTTTCTTTGCCGTTTGTATGCGCGCATCAAAGAAGCTTCATGATAAG
AGCTTTCTTTGTTTGCTTCACAGCCCCATGCGGTTCTTCGATTTGAATCCCGTTGGGCGA
ATCTTGAATAGATTTAGTAAAGACATGGGTGCGGTAGATGAGCTCTTGCCAAAAGCAATT
ATTGAAGCAATTCAGAATTTGCTTGTGATGCTTGGTGTATTAGTTTTAATTGGAATTACT
ACAACTGGATATGTACTTGTGGTTGCGTTAATAGGTGCAATTATTCTCTATGTATTAATT
CTGCGTCTTTATTTGCAACCAGCTAGAGATTTGAAAAGACTAGAGGGAATTACCAAGAGT
CCCGTGTTCAGTCAAATGTCGGCTACTTTAATTGGTATATCGACCATTCGAGCGTCCAAT
ATGAATTCTCAATTAACTCTTGAATTTGATAAACTCCAGAATGTTCATTCAAGTGTATGG
CAGACACTCTGGAGCATCAATACAGCTTTGGGACTTTGGTTAGATTGTGTATCATGTACA
TTTGTGGCATGTATCTGCTTTAGTTTCATCATGATGAGTCAGGAGAATACAAACAGCTCA
AATGTTGGTCTTGCTATTTCGCAAGCCTTGATTTTGACTGGAATGGTACAGTATGGAATC
AAGCAAATGATGGAGTCATTTCAACTTTTTACTAACACTGAACGTGTTCTTGAATACACG
AGATTAGATCAGGAACCTTTAATTTCTAGAAAGCCCACACGAGATTGGCCATTTAAAGGC
TTGATTGAAATCAAAAACATGTCGCTCTATTATGATATCCATTCATCTCCCGCTTTAAAG
AATTTAAATTTAGTTATTGAACCTGGATCAAAAATAGGAATAGTTGGGCGAACGGGTGCG
GGAAAGAGCTCAATCATAGCTGCACTATTCCGTTTGTCATATATTGATGGTCGTATATTG
ATTGATGGCATCGACACGAGTGAAATAAATCTCGAAAGCTTACGTTCAAAAATTTCAATT
ATTCCACAAAATCCAGTTTTATTCAGCGCTACAATACGTTACAACTTAGATCCATTCTCG
TTATTTTCAGACGAGGAAATATGGCGCGCATTAGAGCTAGTTGAGCTAAAGTCAGCCATA
AATGGATTGCAATTTATGGTCACTGAGGGTGGAAGCAATTTTTCAGTTGGTCAAAGGCAA
TTATTGTGTTTAGCGCGAGCGACATTGAGAAAAAACAAAATCCTTCTCCTTGATGAAGCC
ACTGCCAACATAGATCAACAGACGGATGCATTAATTCAAAAAACCATTCGAGAGAAGTTT
TCGCATTGTACTGTTCTTACAATTGCTCATCGGTTACATACAGTAATGGATTCTGATAAA
ATACTTGTTATGGATGATGGTTATGCAAAAGAATTTGATATTCCATACAAATTACTGCAA
CAACCATTTGGTGTTTTTAAAGATCTTGTTAATAATTTAGACGATATTGATAGACAAAAT
TTAATTGAAATTGCAAAACGAAAATATGAAGAAATTTTTGATCAAGAGGAGCAGAGGGAT
AGTCTTTGGAAATTTCGAAATGATTGA
>g11523.t1 Gene=g11523 Length=1368
MDYSKKPTKKNPRNGALALSQLFFLWTIPTMLRGCFYGLNREDLTKCLKKDRSQDLGEKL
EVEWEKELEQARKKNRKPQFRNALFHTFWRSCVVDGMLVFIFVLLKSIGPVFFSQLLLQF
QEPQNAIINDSSSNFNETVELSNTTTPLPSTFNSNDFLQYMEYIWTDVYWMATIVILITF
ISCIIGHHMDLRQRMVGARMRIACSAAIYRKSLRMSKRAVTQTSAGNIVNLLSNDVSRLD
YGFIFVHFIWILPFQASLICYLIWREVKYAAIVGVLGLIIKTVPIQTGLSKISSILRMRI
AIRTDNRVSIMNELIQGIQVIKMYAWETPFRNVVKLARNKEVDQIQKAQYIRGIYLSTMV
FTERSTLFLAILACILEGRAITADLVFSMATFFNVLQLTAAIFYPLAVSLGAEALVSIKR
IQDFLSLEEQDSAMPGLHQNKIEVIESETNVIEMINVDATWTNDYRCKTLSNLNIKVKAG
KLCAIIGHVGSGKSSIFQLLLGELSIYSGDVVINGELSYASQDPWLFSASIKNNILFGLQ
YNKTRYQDVIKHCALATDFQQLQYGDKTFVGERGCALSGGQRARVSLARAVYRNASIYLL
DDPLSAVDAQVGQHIFNECIGPHGYLARQRATRILITHQVHFLKEADWIVVMDQGRIIRQ
GTWNDVMDIDISQYVLSLETKEQSSDDDLDEKESKMNLTNDIDDIPYIDDVPESNNGYIK
LRATDLKKSLSRASSANSVEENLELIEQTEARDEEKSTQNIHFIKVFYEYFRAGASPLVL
LSIVIYLLFSQAVTSGSDFFLTFWTNQELLRLHGGKTVIETTDGLYIYGFLILAVIFVTM
SRGFIFFAVCMRASKKLHDKSFLCLLHSPMRFFDLNPVGRILNRFSKDMGAVDELLPKAI
IEAIQNLLVMLGVLVLIGITTTGYVLVVALIGAIILYVLILRLYLQPARDLKRLEGITKS
PVFSQMSATLIGISTIRASNMNSQLTLEFDKLQNVHSSVWQTLWSINTALGLWLDCVSCT
FVACICFSFIMMSQENTNSSNVGLAISQALILTGMVQYGIKQMMESFQLFTNTERVLEYT
RLDQEPLISRKPTRDWPFKGLIEIKNMSLYYDIHSSPALKNLNLVIEPGSKIGIVGRTGA
GKSSIIAALFRLSYIDGRILIDGIDTSEINLESLRSKISIIPQNPVLFSATIRYNLDPFS
LFSDEEIWRALELVELKSAINGLQFMVTEGGSNFSVGQRQLLCLARATLRKNKILLLDEA
TANIDQQTDALIQKTIREKFSHCTVLTIAHRLHTVMDSDKILVMDDGYAKEFDIPYKLLQ
QPFGVFKDLVNNLDDIDRQNLIEIAKRKYEEIFDQEEQRDSLWKFRND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 46 | g11523.t1 | CDD | cd18579 | ABC_6TM_ABCC_D1 | 155 | 421 | 4.02287E-85 |
| 48 | g11523.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 452 | 656 | 1.56895E-96 |
| 45 | g11523.t1 | CDD | cd18580 | ABC_6TM_ABCC_D2 | 780 | 1080 | 1.30205E-79 |
| 47 | g11523.t1 | CDD | cd03244 | ABCC_MRP_domain2 | 1100 | 1315 | 2.49047E-119 |
| 17 | g11523.t1 | Coils | Coil | Coil | 736 | 756 | - |
| 16 | g11523.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 145 | 424 | 1.7E-10 |
| 13 | g11523.t1 | Gene3D | G3DSA:3.40.50.300 | - | 425 | 704 | 4.1E-72 |
| 15 | g11523.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 744 | 1086 | 2.8E-30 |
| 14 | g11523.t1 | Gene3D | G3DSA:3.40.50.300 | - | 1087 | 1331 | 1.4E-77 |
| 6 | g11523.t1 | PANTHER | PTHR24223:SF334 | FI20190P1 | 1 | 132 | 0.0 |
| 8 | g11523.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 132 | 0.0 |
| 5 | g11523.t1 | PANTHER | PTHR24223:SF334 | FI20190P1 | 156 | 1334 | 0.0 |
| 7 | g11523.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 156 | 1334 | 0.0 |
| 1 | g11523.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 146 | 397 | 5.2E-19 |
| 3 | g11523.t1 | Pfam | PF00005 | ABC transporter | 470 | 604 | 3.8E-21 |
| 2 | g11523.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 779 | 1054 | 1.9E-28 |
| 4 | g11523.t1 | Pfam | PF00005 | ABC transporter | 1119 | 1262 | 3.0E-30 |
| 28 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 19 | - |
| 37 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 20 | 39 | - |
| 20 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 40 | 82 | - |
| 42 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 83 | 105 | - |
| 27 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 106 | 167 | - |
| 39 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 168 | 191 | - |
| 18 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 192 | 240 | - |
| 33 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 241 | 264 | - |
| 25 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 265 | 269 | - |
| 41 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 270 | 289 | - |
| 23 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 290 | 366 | - |
| 35 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 389 | - |
| 29 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 390 | 394 | - |
| 34 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 395 | 416 | - |
| 24 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 417 | 777 | - |
| 43 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 778 | 805 | - |
| 31 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 806 | 824 | - |
| 40 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 825 | 850 | - |
| 21 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 851 | 898 | - |
| 38 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 899 | 919 | - |
| 30 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 920 | 924 | - |
| 36 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 925 | 945 | - |
| 19 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 946 | 1009 | - |
| 44 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1010 | 1030 | - |
| 26 | g11523.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1031 | 1041 | - |
| 32 | g11523.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1042 | 1060 | - |
| 22 | g11523.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1061 | 1368 | - |
| 64 | g11523.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 577 | 591 | - |
| 63 | g11523.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 1234 | 1248 | - |
| 66 | g11523.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 98 | 412 | 24.328 |
| 67 | g11523.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 452 | 679 | 22.136 |
| 65 | g11523.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 779 | 1072 | 28.148 |
| 68 | g11523.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1102 | 1331 | 16.713 |
| 61 | g11523.t1 | SMART | SM00382 | AAA_5 | 479 | 662 | 1.5E-8 |
| 62 | g11523.t1 | SMART | SM00382 | AAA_5 | 1128 | 1318 | 7.3E-11 |
| 10 | g11523.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 80 | 589 | 3.4E-24 |
| 12 | g11523.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 447 | 669 | 4.53E-55 |
| 9 | g11523.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 784 | 1085 | 8.5E-42 |
| 11 | g11523.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1093 | 1330 | 2.09E-66 |
| 51 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 37 | - |
| 54 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 59 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 163 | 185 | - |
| 52 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 243 | 265 | - |
| 56 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 270 | 292 | - |
| 58 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 353 | 375 | - |
| 60 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 412 | - |
| 49 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 773 | 795 | - |
| 50 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 824 | 846 | - |
| 57 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 907 | 941 | - |
| 53 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1009 | 1031 | - |
| 55 | g11523.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1038 | 1060 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
