General information for g1155.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative 26S proteasome non-ATPase regulatory subunit 9.
Parent gene
- The parent gene g1155 is located on chr_3: 8416235..8416924 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1155 | g1155.t2 | isoform | g1155.t2 | 8415844 | 8416753 |
| chr_3 | g1155 | g1155.t2 | exon | g1155.t2.exon1 | 8415844 | 8416753 |
| chr_3 | g1155 | g1155.t2 | cds | g1155.t2.CDS1 | 8416235 | 8416627 |
| chr_3 | g1155 | g1155.t2 | TSS | g1155.t2 | 8417001 | 8417001 |
| chr_3 | g1155 | g1155.t2 | TTS | g1155.t2 | NA | NA |
Sequences
>g1155.t2 Gene=g1155 Length=910
AATAATATTGGCTTTCATGAACCGCTTGTTGATGAAGAAGGCTTTCCACGAAATGATATT
GATGTGAGATCAGTTCGTCTTGCTAGAACACAAATTATATGTCTCCAAAATGACTTAAAA
AATTTGATGAAAGTGATAGATGAAGGATTGCAAAAATATTTCTACGATCGTAAAGATGTT
CCTGAAGCATCATCATCTAAACTCCCTCCTCAAATGAAGAAATTATCACTTAATGAGAAC
ATGCGACCATTTTTAGTTATTAATGTTGTTGATCCTAACTCACCTGGTGAAATGTGTGGT
GTACAAGTAAATGATTTGATATGTAGTTTCGGTTCGATTAATTACACAAACTTCAAAGAT
TTGTCACAAATTGGAGAATTAGTAAAAAATTGTGAAAAACAGCAAGTCAAAATAACTGTT
AGACGAAACGGCAATTATATGGATCTTATTTTAGTACCTAAGCTCGGTTGGGGAGGAAAT
GGGTTTCTTGGCTTCAAAGTTGCTGCTTTACCACATTAATATTTAATAAAACTTTTTTTC
AAAAAAAAACAAACATTGTTTCTCTACTTGATGTGCTTTTTTATTCACATTGAGAAAGCT
TTTTGAACTCTTCTACAATTTCTTCATCAACTTCAATCATTTGAGCTTGACTACTTTCAT
CTTTGAAGTGTTTTTGAAACATATAATCACTTAAATATTTGTTAGGATCATTAGGACGTA
AAGTTGTTAATTCAAGAATGCCATCAATGAGATGAGGAAAAACATGTGTATTTAAATATT
CACGAACAGGTGCACTGCGCTTTTCAATCTCTTTTATCTCCGCTTTCTTTTTCTCACATA
ATTCGTTATTCTAAAAAGAATAAAAACGTTATAATCTAATCATATAAAAAGAAAGCTTTA
TTTTCATACT
>g1155.t2 Gene=g1155 Length=130
MKVIDEGLQKYFYDRKDVPEASSSKLPPQMKKLSLNENMRPFLVINVVDPNSPGEMCGVQ
VNDLICSFGSINYTNFKDLSQIGELVKNCEKQQVKITVRRNGNYMDLILVPKLGWGGNGF
LGFKVAALPH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1155.t2 | CDD | cd00136 | PDZ | 33 | 99 | 0.00000 |
| 5 | g1155.t2 | Gene3D | G3DSA:2.30.42.10 | - | 29 | 126 | 0.00000 |
| 2 | g1155.t2 | PANTHER | PTHR12651 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9 | 36 | 125 | 0.00000 |
| 1 | g1155.t2 | Pfam | PF17820 | PDZ domain | 44 | 100 | 0.00000 |
| 4 | g1155.t2 | SMART | SM00228 | pdz_new | 31 | 102 | 0.00022 |
| 3 | g1155.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 38 | 111 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070682 | proteasome regulatory particle assembly | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
