General information for g11566.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11566 is located on chr_1: 17171551..17174532 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11566 | g11566.t5 | isoform | g11566.t5 | 17171551 | 17174074 |
| chr_1 | g11566 | g11566.t5 | exon | g11566.t5.exon1 | 17171551 | 17171903 |
| chr_1 | g11566 | g11566.t5 | cds | g11566.t5.CDS1 | 17171600 | 17171903 |
| chr_1 | g11566 | g11566.t5 | exon | g11566.t5.exon2 | 17173369 | 17174074 |
| chr_1 | g11566 | g11566.t5 | cds | g11566.t5.CDS2 | 17173369 | 17173463 |
| chr_1 | g11566 | g11566.t5 | TSS | g11566.t5 | NA | NA |
| chr_1 | g11566 | g11566.t5 | TTS | g11566.t5 | NA | NA |
Sequences
>g11566.t5 Gene=g11566 Length=1059
AGTAAGCAACAAAATTAATTTAATTTTAACGCGTTGTATTCATAATTTTATGTTTATTTA
CAGAGATGATATTCTCTTGCCAACTTCCAATCAGGTGCAGAGTAAATATGGTGGTTATAT
TCTTAAAAATCTCACAGACAAAGATTCGGGTATTTATAGTTGTTCAGCTATGAATACTGT
AGCCGGTACAGAAATTAAATTGCCGCAACGCTACTCAATCACTGTCACACCAACGTCAAG
AAGTGCACCTTCGTTTTTACTCGAACCATTGTCATCATTTGCCGTAAAGCCAGGAGAAAA
CGTGTTACTAGAATGCTCGGCTGTCTCGAATCCGGTTTTTAAAGCGACATGGATTACCTT
TAATAATTATTGGCGGATGTGCTCTTCTCGTCTTAATCTTGATATTAGTTTTTATTGCCT
TGAAAAAGCGTCGAGATATAGTCAATAATCAACACGAAGGTACATTTAATCATATAATTA
TAGACAATAATGTTTTTTACAAATTGTATTTTTACTTTTGTCTATAGAACAAGAGAGCAA
ATCAAATCCGAATCATATACAAGTTGATTCAGTCACTAATGGCAGACGATCACCAATTTT
GCGCAACAATAGGCATCTGAATGGCATTTTACGCATCAATATTACACCGAATCCACTGAC
AGATGAAAAAGTAAATAATTTAATAAATTCACTTTTTTTCTTGCACTATTTTTTCGCAAA
TTCATACACACTTGATAATGAAAAAAATACGATTGTCAATCGGTGCGCATTTTCCTCACA
CTTTCGAATATCTTAAAAAATGTTGTATCACACATACACTCAAAATTTTCTATCGGAAAG
TACGCTCAAGAGGCAATTCTTCATAATTTATCCAATAGTAGTTATTTCTTGTTATCACAA
TTTATTTTCCTTTCAATATATATAAATAAATTCACTCAACTCAAATTTTATCCCTTATAA
TTGTGATACAACCAAACTGTGACTATGTGTTTTAGAATCGATTGGAATTATCTTCAATTG
GTCTCAACAACAATAATAATTGTCTTTCATCGTCGCAGA
>g11566.t5 Gene=g11566 Length=132
MFIYRDDILLPTSNQVQSKYGGYILKNLTDKDSGIYSCSAMNTVAGTEIKLPQRYSITVT
PTSRSAPSFLLEPLSSFAVKPGENVLLECSAVSNPVFKATWITFNNYWRMCSSRLNLDIS
FYCLEKASRYSQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11566.t5 | CDD | cd00096 | Ig | 4 | 48 | 0.0019905 |
| 5 | g11566.t5 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 4 | 61 | 0.0000010 |
| 6 | g11566.t5 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 62 | 118 | 0.0000350 |
| 1 | g11566.t5 | PANTHER | PTHR44170:SF23 | BROTHER OF IHOG, ISOFORM G-RELATED | 17 | 108 | 0.0000000 |
| 2 | g11566.t5 | PANTHER | PTHR44170 | PROTEIN SIDEKICK | 17 | 108 | 0.0000000 |
| 7 | g11566.t5 | ProSiteProfiles | PS50835 | Ig-like domain profile. | 67 | 101 | 6.8140000 |
| 3 | g11566.t5 | SUPERFAMILY | SSF48726 | Immunoglobulin | 3 | 59 | 0.0000129 |
| 4 | g11566.t5 | SUPERFAMILY | SSF48726 | Immunoglobulin | 66 | 113 | 0.0000004 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
