General information for g11622.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial.
Parent gene
- The parent gene g11622 is located on chr_1: 17483890..17485437 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11622 | g11622.t4 | TSS | g11622.t4 | 17482591 | 17482591 |
| chr_1 | g11622 | g11622.t4 | isoform | g11622.t4 | 17482779 | 17484120 |
| chr_1 | g11622 | g11622.t4 | exon | g11622.t4.exon1 | 17482779 | 17482816 |
| chr_1 | g11622 | g11622.t4 | cds | g11622.t4.CDS1 | 17482779 | 17482816 |
| chr_1 | g11622 | g11622.t4 | exon | g11622.t4.exon2 | 17482945 | 17483678 |
| chr_1 | g11622 | g11622.t4 | cds | g11622.t4.CDS2 | 17482945 | 17483678 |
| chr_1 | g11622 | g11622.t4 | exon | g11622.t4.exon3 | 17483732 | 17483828 |
| chr_1 | g11622 | g11622.t4 | cds | g11622.t4.CDS3 | 17483732 | 17483828 |
| chr_1 | g11622 | g11622.t4 | exon | g11622.t4.exon4 | 17483887 | 17484120 |
| chr_1 | g11622 | g11622.t4 | cds | g11622.t4.CDS4 | 17483887 | 17484118 |
| chr_1 | g11622 | g11622.t4 | TTS | g11622.t4 | 17484921 | 17484921 |
Sequences
>g11622.t4 Gene=g11622 Length=1103
ATGCTAATGTTGAGAAAAACCTTTGTTTCAAATTTAAGACCTCGATATATTTCGTCGGTT
GTTCCAGAACATAATTTAAAAGATTTCGATGTGAAAAATGAGCCAATTTTAGGGTATAAA
AAAGGTTCAACAGAACGGAATGAATTAGTTAAAGCTCTTGAAGAAGCTAAATCAAATGTT
GCTGATTGTCCTATTATCATTGGTGGAGAAGAATTTCGTACAAACGATGTTCGTTATCAA
GTTATGCCACATGATCATAAGCATCAAATTGCAAGATTTTATTATGCCGATGCGAATTTG
ATCCAAAAAGCAATCAACAAGTCTATCGAAATGCAACCGAAATGGGATCGTACACCATTG
AAAGAGCGTGTAGAAATTTGGGATCGTGCTGCATCACTTATGGCTAACAAGTATAGGCAA
AAGCTTAATGCAGCTACAATGCTTGGTCAGTCAAAGACAGCCATTCAAGCCGAAATCGAT
TCTGCAGCAGAACTTATCGATTTTATTCGCTTCAATGTTTTCTTTTTAAAAGAAAATGCC
AAATATCAACCAATTAGCGAGGATATCAAAGTGACTAAGAATTCAGTGCGATTCCGTGGA
ATTGATGGTTTTGTTGCAGCTATTTCACCGTTTAATTTTACTGCTATCGGAGGAAATCTT
TCATATACACCGGCATTAGTTGGTAATTCAGTCTTATGGAAACCATCTGACACTGCTGTA
TTATCAAATTGGACAATTTACGAAATAATGAGAGAAGCTGGTGTACCAGAAGGTGTTGTT
AATTTTATTCCTGCTGATGGTCCAATATTTGGTGATACAATTACCAAGTCGAAATATCTT
GGAGGTATTAATTTTACTGGTTCAGTTCCAACTTTCAATCGTCTTTGGAGACAAGTGGGT
GAAAATATTGAAAATTATATAAATTATCCTAAATTAATTGGCGAGTGCGGTGGAAAAAAT
TATCACTTTGTGCATCCTAGTGCAGATATTGAAACTGTTGTTACTGCTACTATTCGTTCT
GCATTTGAATATTGTGGTCAAAAATGCTCTGCTTGTTCGCGTGCATATATTCCAGAATCA
CTTTGGCCAAAGATAAAAGAAGG
>g11622.t4 Gene=g11622 Length=367
MLMLRKTFVSNLRPRYISSVVPEHNLKDFDVKNEPILGYKKGSTERNELVKALEEAKSNV
ADCPIIIGGEEFRTNDVRYQVMPHDHKHQIARFYYADANLIQKAINKSIEMQPKWDRTPL
KERVEIWDRAASLMANKYRQKLNAATMLGQSKTAIQAEIDSAAELIDFIRFNVFFLKENA
KYQPISEDIKVTKNSVRFRGIDGFVAAISPFNFTAIGGNLSYTPALVGNSVLWKPSDTAV
LSNWTIYEIMREAGVPEGVVNFIPADGPIFGDTITKSKYLGGINFTGSVPTFNRLWRQVG
ENIENYINYPKLIGECGGKNYHFVHPSADIETVVTATIRSAFEYCGQKCSACSRAYIPES
LWPKIKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11622.t4 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 66 | 316 | 9.9E-91 |
| 7 | g11622.t4 | Gene3D | G3DSA:3.40.309.10 | Aldehyde Dehydrogenase; Chain A | 317 | 366 | 9.9E-91 |
| 2 | g11622.t4 | PANTHER | PTHR14516 | 1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE FAMILY MEMBER | 13 | 367 | 4.3E-184 |
| 3 | g11622.t4 | PANTHER | PTHR14516:SF6 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, MITOCHONDRIAL-LIKE PROTEIN | 13 | 367 | 4.3E-184 |
| 1 | g11622.t4 | Pfam | PF00171 | Aldehyde dehydrogenase family | 79 | 365 | 2.3E-58 |
| 5 | g11622.t4 | ProSitePatterns | PS00070 | Aldehyde dehydrogenases cysteine active site. | 342 | 353 | - |
| 4 | g11622.t4 | SUPERFAMILY | SSF53720 | ALDH-like | 29 | 365 | 2.09E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
