Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Fructose-bisphosphate aldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11637 g11637.t12 TSS g11637.t12 17529534 17529534
chr_1 g11637 g11637.t12 isoform g11637.t12 17530301 17536960
chr_1 g11637 g11637.t12 exon g11637.t12.exon1 17530301 17530722
chr_1 g11637 g11637.t12 cds g11637.t12.CDS1 17530617 17530722
chr_1 g11637 g11637.t12 exon g11637.t12.exon2 17530788 17530988
chr_1 g11637 g11637.t12 cds g11637.t12.CDS2 17530788 17530988
chr_1 g11637 g11637.t12 exon g11637.t12.exon3 17536004 17536960
chr_1 g11637 g11637.t12 cds g11637.t12.CDS3 17536004 17536065
chr_1 g11637 g11637.t12 TTS g11637.t12 17536972 17536972

Sequences

>g11637.t12 Gene=g11637 Length=1580
TCTCGATAACTTGGCACAACGTTGTGCTCAGTACAAGAAGGATGGCTGTGACTTCGCCAA
GTGGCGTTGTGTTTTGAAGATTGGCAAAAACACACCCAGCTACCAAGCTATTTTGGAAAA
TGCCAATGTCTTGGCTCGCTATGCTTCAATCTGTCAATCACAAGGTATTGTTCCCATTGT
TGAGCCTGAAATCTTGCCCGATGGTGACCACGATCTTGAGCGTTGCCAGAAAGTCACTGA
AGTTGTCTTGGCTGCTGTTTACAAAGCACTCAGCGATCATCATGTCTTCTTGGAAGGTAC
ATTATTGAAACCAAACATGGTCACAGCTGGTATGCAATTTAAGGGAACTAAACCAACACC
TGAACAAATTGCTGAAGCTACTGTCACAGCTTTGCGCCGTACCGTTCCAGCTGCTGTTCC
TGGTGTTACATTCTTGTCTGGTGGTCAATCAGAAGAAGAAGCCTCAGTCAATTTGAACGC
TATCAACAACCAACCAAAGAGACCATGGGCTTTGACATTCTCATATGGTCGTGCTTTGCA
AGCTTCAGTTTTGAGAGCATGGGGAGGTAAGAAGGAGAATGTAAAGGCTGGACAAGAGGA
ACTTCTTAAGCGTGCAAGGGTAAGCAAATGGCTTAGCTTCAGTTGGCAAGTACACTGCTG
GAAGCGTTGTAGGTGCAGGTGCTGATGCAACACTTTTCGTCGCTAACCACGCTTATTAAA
CTGCCTCAAAATTTGAGACAGAAAAAAGTGTGTGTGTCAAACAAGCAAACACTGAAAATA
ATATTAATATGTGGTATATGTGGCCCCGTATAACTAAAAAACAGAATAAAAATGAAAGTA
AATTAAATATTTATTCACACGTATCCATTAATGTGGCAGCAACGAAAAATTGAAAAATTT
CTTTATGTACGCGAAATATACCAACAACTATAACAAGCGCTACAATTAATTTTGACAAAG
TGACAGTGTACTACTTTAATGGAAATTGATCTTTATGTTACAATTTTATAACAACATAAA
CAAGCATCAAACATACACGAAACTCTCTATGATAATTTTCACGCAAAAATGTGTATATGT
TTAGCTGATAGCTATTCATAGAAGTAGTTGAATAATAGGCACATATACCGACATATATGA
AAAATATAAATTATTATGAAAAATGTTTTAAAAATATAATGTTAATGCAAGAAATATCAA
GACACAAGACAAGAGGTATAGATTTGTTTCTATTTAATAAAAATAAATTATATGATGATA
AAACGATTGCAACAAATTCTCATGATTGTCTTTCATATCTCACTTTCAATTTGTCTGTAT
ATATCTATATACAGTTCAATTATTATTTAGTTAAATGATATTTTAGTAGAAATGTAAATT
TATAATTTTTTTTTTGAAAAATAAAAAAACGTAATTTAATCTCGCTTTACAAGTTCGAGC
AAAAATTGTCTCTAAATTTTTATTTTTTTTTCGCGCAGAATTGTATAATTTTTTTTACTT
CTTATGACTTCTTTTCAATATAAAGATGAATTATACAATAGTTCTCTTGTGAAACAATAA
AGTTGATGAAAATAAAGTTT

>g11637.t12 Gene=g11637 Length=122
MVTAGMQFKGTKPTPEQIAEATVTALRRTVPAAVPGVTFLSGGQSEEEASVNLNAINNQP
KRPWALTFSYGRALQASVLRAWGGKKENVKAGQEELLKRARVSKWLSFSWQVHCWKRCRC
RC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g11637.t12 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 108 0
2 g11637.t12 PANTHER PTHR11627 FRUCTOSE-BISPHOSPHATE ALDOLASE 1 103 0
1 g11637.t12 Pfam PF00274 Fructose-bisphosphate aldolase class-I 1 103 0
3 g11637.t12 SUPERFAMILY SSF51569 Aldolase 2 104 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004332 fructose-bisphosphate aldolase activity MF
GO:0006096 glycolytic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values