Gene loci information

Transcript annotation

  • This transcript has been annotated as Fructose-bisphosphate aldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11637 g11637.t3 TSS g11637.t3 17529534 17529534
chr_1 g11637 g11637.t3 isoform g11637.t3 17529563 17532627
chr_1 g11637 g11637.t3 exon g11637.t3.exon1 17529563 17530001
chr_1 g11637 g11637.t3 cds g11637.t3.CDS1 17529971 17530001
chr_1 g11637 g11637.t3 exon g11637.t3.exon2 17530300 17530722
chr_1 g11637 g11637.t3 cds g11637.t3.CDS2 17530300 17530722
chr_1 g11637 g11637.t3 exon g11637.t3.exon3 17530788 17530984
chr_1 g11637 g11637.t3 cds g11637.t3.CDS3 17530788 17530984
chr_1 g11637 g11637.t3 exon g11637.t3.exon4 17532532 17532627
chr_1 g11637 g11637.t3 cds g11637.t3.CDS4 17532532 17532627
chr_1 g11637 g11637.t3 TTS g11637.t3 17532955 17532955

Sequences

>g11637.t3 Gene=g11637 Length=1155
ATGACTACCTACTATAACAACTATCCAAAAGAATTGCAAGAAGAATTGAAGCGCATTGCA
AATGCAATTGTTGCTCCAGGAAAAGGTATCTTGGCTGCTGATGAATCAACTGCTACATGC
GGCAAGCGTTTTGCTGTAAATATCATGCACTTTGATCAAGAATATTTGTTTTAAATCTTT
TTTTTTTAATTTTAGGATATTGGATTAGAGAATAACGAAGAAAATCGTCGTGCATATCGT
GAATTACTTTTCACCACTGATGACGCTATTGCCACCAACATTTCAGGTGTCATTTTGTTC
CATGAGACCGTTTACCAAAAAGCTGCCTGTGGAACCTCATTCATTGATATCTTGAAGAAG
AAAGGTATCATTCCTGGTATCAAAGTCGACAGCGGTGTTGTTGATTTAATGGCAAGCGAA
GGAGAATGCACAACTCAAGGTCTCGATAACTTGGCACAACGTTGTGCTCAGTACAAGAAG
GATGGCTGTGACTTCGCCAAGTGGCGTTGTGTTTTGAAGATTGGCAAAAACACACCCAGC
TACCAAGCTATTTTGGAAAATGCCAATGTCTTGGCTCGCTATGCTTCAATCTGTCAATCA
CAAGGTATTGTTCCCATTGTTGAGCCTGAAATCTTGCCCGATGGTGACCACGATCTTGAG
CGTTGCCAGAAAGTCACTGAAGTTGTCTTGGCTGCTGTTTACAAAGCACTCAGCGATCAT
CATGTCTTCTTGGAAGGTACATTATTGAAACCAAACATGGTCACAGCTGGTATGCAATTT
AAGGGAACTAAACCAACACCTGAACAAATTGCTGAAGCTACTGTCACAGCTTTGCGCCGT
ACCGTTCCAGCTGCTGTTCCTGGTGTTACATTCTTGTCTGGTGGTCAATCAGAAGAAGAA
GCCTCAGTCAATTTGAACGCTATCAACAACCAACCAAAGAGACCATGGGCTTTGACATTC
TCATATGGTCGTGCTTTGCAAGCTTCAGTTTTGAGAGCATGGGGAGGTAAGAAGGAGAAT
GTAAAGGCTGGACAAGAGGAACTTCTTAAGCGTGCAAGGGCCAATGCACTAGCATGTCAA
GGAAAGTATGTGGCTGGCTCAATCCCTTCGTTTGCTGCAACCACAAGCCTCTTTGTCAAA
GCACATGCTTATTAA

>g11637.t3 Gene=g11637 Length=248
MASEGECTTQGLDNLAQRCAQYKKDGCDFAKWRCVLKIGKNTPSYQAILENANVLARYAS
ICQSQGIVPIVEPEILPDGDHDLERCQKVTEVVLAAVYKALSDHHVFLEGTLLKPNMVTA
GMQFKGTKPTPEQIAEATVTALRRTVPAAVPGVTFLSGGQSEEEASVNLNAINNQPKRPW
ALTFSYGRALQASVLRAWGGKKENVKAGQEELLKRARANALACQGKYVAGSIPSFAATTS
LFVKAHAY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11637.t3 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 248 1.1E-124
2 g11637.t3 PANTHER PTHR11627:SF1 FRUCTOSE-BISPHOSPHATE ALDOLASE A 3 248 1.7E-124
3 g11637.t3 PANTHER PTHR11627 FRUCTOSE-BISPHOSPHATE ALDOLASE 3 248 1.7E-124
1 g11637.t3 Pfam PF00274 Fructose-bisphosphate aldolase class-I 2 248 1.6E-126
5 g11637.t3 ProSitePatterns PS00158 Fructose-bisphosphate aldolase class-I active site. 106 116 -
4 g11637.t3 SUPERFAMILY SSF51569 Aldolase 4 248 1.88E-101

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004332 fructose-bisphosphate aldolase activity MF
GO:0006096 glycolytic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed