General information for g11637.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fructose-bisphosphate aldolase.
Parent gene
- The parent gene g11637 is located on chr_1: 17536036..17544729 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11637 | g11637.t4 | TSS | g11637.t4 | 17529534 | 17529534 |
| chr_1 | g11637 | g11637.t4 | isoform | g11637.t4 | 17529563 | 17536812 |
| chr_1 | g11637 | g11637.t4 | exon | g11637.t4.exon1 | 17529563 | 17530001 |
| chr_1 | g11637 | g11637.t4 | cds | g11637.t4.CDS1 | 17529971 | 17530001 |
| chr_1 | g11637 | g11637.t4 | exon | g11637.t4.exon2 | 17530300 | 17530722 |
| chr_1 | g11637 | g11637.t4 | cds | g11637.t4.CDS2 | 17530300 | 17530722 |
| chr_1 | g11637 | g11637.t4 | exon | g11637.t4.exon3 | 17530788 | 17530988 |
| chr_1 | g11637 | g11637.t4 | cds | g11637.t4.CDS3 | 17530788 | 17530988 |
| chr_1 | g11637 | g11637.t4 | exon | g11637.t4.exon4 | 17536004 | 17536812 |
| chr_1 | g11637 | g11637.t4 | cds | g11637.t4.CDS4 | 17536004 | 17536065 |
| chr_1 | g11637 | g11637.t4 | TTS | g11637.t4 | 17536972 | 17536972 |
Sequences
>g11637.t4 Gene=g11637 Length=1872
ATGACTACCTACTATAACAACTATCCAAAAGAATTGCAAGAAGAATTGAAGCGCATTGCA
AATGCAATTGTTGCTCCAGGAAAAGGTATCTTGGCTGCTGATGAATCAACTGCTACATGC
GGCAAGCGTTTTGCTGTAAATATCATGCACTTTGATCAAGAATATTTGTTTTAAATCTTT
TTTTTTTAATTTTAGGATATTGGATTAGAGAATAACGAAGAAAATCGTCGTGCATATCGT
GAATTACTTTTCACCACTGATGACGCTATTGCCACCAACATTTCAGGTGTCATTTTGTTC
CATGAGACCGTTTACCAAAAAGCTGCCTGTGGAACCTCATTCATTGATATCTTGAAGAAG
AAAGGTATCATTCCTGGTATCAAAGTCGACAGCGGTGTTGTTGATTTAATGGCAAGCGAA
GGAGAATGCACAACTCAAGGTCTCGATAACTTGGCACAACGTTGTGCTCAGTACAAGAAG
GATGGCTGTGACTTCGCCAAGTGGCGTTGTGTTTTGAAGATTGGCAAAAACACACCCAGC
TACCAAGCTATTTTGGAAAATGCCAATGTCTTGGCTCGCTATGCTTCAATCTGTCAATCA
CAAGGTATTGTTCCCATTGTTGAGCCTGAAATCTTGCCCGATGGTGACCACGATCTTGAG
CGTTGCCAGAAAGTCACTGAAGTTGTCTTGGCTGCTGTTTACAAAGCACTCAGCGATCAT
CATGTCTTCTTGGAAGGTACATTATTGAAACCAAACATGGTCACAGCTGGTATGCAATTT
AAGGGAACTAAACCAACACCTGAACAAATTGCTGAAGCTACTGTCACAGCTTTGCGCCGT
ACCGTTCCAGCTGCTGTTCCTGGTGTTACATTCTTGTCTGGTGGTCAATCAGAAGAAGAA
GCCTCAGTCAATTTGAACGCTATCAACAACCAACCAAAGAGACCATGGGCTTTGACATTC
TCATATGGTCGTGCTTTGCAAGCTTCAGTTTTGAGAGCATGGGGAGGTAAGAAGGAGAAT
GTAAAGGCTGGACAAGAGGAACTTCTTAAGCGTGCAAGGGTAAGCAAATGGCTTAGCTTC
AGTTGGCAAGTACACTGCTGGAAGCGTTGTAGGTGCAGGTGCTGATGCAACACTTTTCGT
CGCTAACCACGCTTATTAAACTGCCTCAAAATTTGAGACAGAAAAAAGTGTGTGTGTCAA
ACAAGCAAACACTGAAAATAATATTAATATGTGGTATATGTGGCCCCGTATAACTAAAAA
ACAGAATAAAAATGAAAGTAAATTAAATATTTATTCACACGTATCCATTAATGTGGCAGC
AACGAAAAATTGAAAAATTTCTTTATGTACGCGAAATATACCAACAACTATAACAAGCGC
TACAATTAATTTTGACAAAGTGACAGTGTACTACTTTAATGGAAATTGATCTTTATGTTA
CAATTTTATAACAACATAAACAAGCATCAAACATACACGAAACTCTCTATGATAATTTTC
ACGCAAAAATGTGTATATGTTTAGCTGATAGCTATTCATAGAAGTAGTTGAATAATAGGC
ACATATACCGACATATATGAAAAATATAAATTATTATGAAAAATGTTTTAAAAATATAAT
GTTAATGCAAGAAATATCAAGACACAAGACAAGAGGTATAGATTTGTTTCTATTTAATAA
AAATAAATTATATGATGATAAAACGATTGCAACAAATTCTCATGATTGTCTTTCATATCT
CACTTTCAATTTGTCTGTATATATCTATATACAGTTCAATTATTATTTAGTTAAATGATA
TTTTAGTAGAAATGTAAATTTATAATTTTTTTTTTGAAAAATAAAAAAACGTAATTTAAT
CTCGCTTTACAA
>g11637.t4 Gene=g11637 Length=238
MASEGECTTQGLDNLAQRCAQYKKDGCDFAKWRCVLKIGKNTPSYQAILENANVLARYAS
ICQSQGIVPIVEPEILPDGDHDLERCQKVTEVVLAAVYKALSDHHVFLEGTLLKPNMVTA
GMQFKGTKPTPEQIAEATVTALRRTVPAAVPGVTFLSGGQSEEEASVNLNAINNQPKRPW
ALTFSYGRALQASVLRAWGGKKENVKAGQEELLKRARVSKWLSFSWQVHCWKRCRCRC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11637.t4 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 224 | 3.8E-115 |
| 2 | g11637.t4 | PANTHER | PTHR11627:SF3 | FRUCTOSE-BISPHOSPHATE ALDOLASE C | 3 | 220 | 5.8E-114 |
| 3 | g11637.t4 | PANTHER | PTHR11627 | FRUCTOSE-BISPHOSPHATE ALDOLASE | 3 | 220 | 5.8E-114 |
| 1 | g11637.t4 | Pfam | PF00274 | Fructose-bisphosphate aldolase class-I | 2 | 219 | 2.8E-118 |
| 5 | g11637.t4 | ProSitePatterns | PS00158 | Fructose-bisphosphate aldolase class-I active site. | 106 | 116 | - |
| 4 | g11637.t4 | SUPERFAMILY | SSF51569 | Aldolase | 4 | 220 | 9.42E-95 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004332 | fructose-bisphosphate aldolase activity | MF |
| GO:0006096 | glycolytic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
