Gene loci information

Transcript annotation

  • This transcript has been annotated as E3 ubiquitin-protein ligase hyd.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11643 g11643.t3 TTS g11643.t3 17593473 17593473
chr_1 g11643 g11643.t3 isoform g11643.t3 17593805 17604716
chr_1 g11643 g11643.t3 exon g11643.t3.exon1 17593805 17594017
chr_1 g11643 g11643.t3 cds g11643.t3.CDS1 17593805 17594017
chr_1 g11643 g11643.t3 exon g11643.t3.exon2 17594078 17594456
chr_1 g11643 g11643.t3 cds g11643.t3.CDS2 17594078 17594456
chr_1 g11643 g11643.t3 exon g11643.t3.exon3 17594579 17594785
chr_1 g11643 g11643.t3 cds g11643.t3.CDS3 17594579 17594785
chr_1 g11643 g11643.t3 exon g11643.t3.exon4 17594887 17596271
chr_1 g11643 g11643.t3 cds g11643.t3.CDS4 17594887 17596271
chr_1 g11643 g11643.t3 exon g11643.t3.exon5 17596712 17597967
chr_1 g11643 g11643.t3 cds g11643.t3.CDS5 17596712 17597967
chr_1 g11643 g11643.t3 exon g11643.t3.exon6 17598117 17598215
chr_1 g11643 g11643.t3 cds g11643.t3.CDS6 17598117 17598215
chr_1 g11643 g11643.t3 exon g11643.t3.exon7 17598420 17598591
chr_1 g11643 g11643.t3 cds g11643.t3.CDS7 17598420 17598591
chr_1 g11643 g11643.t3 exon g11643.t3.exon8 17598652 17599133
chr_1 g11643 g11643.t3 cds g11643.t3.CDS8 17598652 17599133
chr_1 g11643 g11643.t3 exon g11643.t3.exon9 17599196 17600572
chr_1 g11643 g11643.t3 cds g11643.t3.CDS9 17599196 17600572
chr_1 g11643 g11643.t3 exon g11643.t3.exon10 17600636 17603651
chr_1 g11643 g11643.t3 cds g11643.t3.CDS10 17600636 17603651
chr_1 g11643 g11643.t3 exon g11643.t3.exon11 17603711 17603960
chr_1 g11643 g11643.t3 cds g11643.t3.CDS11 17603711 17603960
chr_1 g11643 g11643.t3 exon g11643.t3.exon12 17604022 17604225
chr_1 g11643 g11643.t3 cds g11643.t3.CDS12 17604022 17604225
chr_1 g11643 g11643.t3 exon g11643.t3.exon13 17604661 17604716
chr_1 g11643 g11643.t3 cds g11643.t3.CDS13 17604661 17604716
chr_1 g11643 g11643.t3 TSS g11643.t3 17604814 17604814

Sequences

>g11643.t3 Gene=g11643 Length=9096
ATGTCGTCGCTTCATTTTGTCGTCTCGATTGGTGGAGGCGACCAATTGAACGATAGAATT
CGTGAGGTTGCGGAAAAAATTAACAAATATGGAACGCAGACATTTCCAGCATTACACTCA
CTCAAAATTCCTGTAAAACAGGTTGTAGTTGGAAACTCATATTTAGGTGTTCTCCTCGCA
GACGGAAGAGCCTTTCGTGTGGCATACTCGGTTATTGCTGAACGACTTGATTTGAGCAAA
CAAGATTCCACAAATAAAAATAATGGCTCAGGCGGCTCAGCTGGTGGAAATGGAACAAAT
AATAGCGGAGCAGGTGGAAGCGGTTCATCATCAAAAAATGCACAAGCATCGTCACGTCAA
CTTGCTCGATCAACTCGTGCTAGAATAATGCGAACAAATGGTAGTTCTGTTCGTGGACAA
ACTTCAAGGAGTACCGGTGTAATTATTGGGGGAACAACTTCTGGTCGTTCACTTGTTCAT
ACCGTACCTGCAACATTCGTTCCTGAAGAACTTATTTCGCAAGCACAAGTTGTTTTACAA
GGAAAAAGTAGAAATTTAATCATTCGCGAGTTGCAAAGAACAAATCTTGATGTAAATTTA
GCCGTTAATAATTTACTTTCTCGTGATGATGAAGAGGGTGAAGATACGGAAGAGGGAAGT
GATAACTATGTACCAGAAGACTTGATTTCGCTACTTGATAGTGGAATTCATCCTGATCCA
AGTCTTTTGCTTGATAATGATGCCATGTTCTCTGAAGATATGAGAACTTTTAGAAATTTA
ATGCTAAGTAGTAGAGACCGTATGCAAAGTTCATCTTCTCAATCAGCAAATCAAAGTGAT
AGCAATAACTTGCGCACAAGCGGAAGTAGCACAGTAAGTGCAGTTGTTACAAGTGGAAGT
GGATCAACTTCGGGAACAGGTGCTAGTTTATCGTTTGGCAGAATTAGAGATAGAACTTAC
TTTGGACCACGTCGATGGTTTCAATCGAATCGAGAAGAGGTACAATGGGAGAAAGAACAA
GATTCCAGAAGCAAAATGGATACAACAGCATCAGGTTTTCCTCTTTGGATATCAGATGAT
TTAGAATTCTGGCCCGACAAAGATGGAACACGTTTTATTCACATAGCTTCATTGTATTCA
GAATTTATTGCTGTTTCTACAAAAGGTGAATTGCATCAATGGCGTTGGACTGATCGTGAA
CCTTATAGAAACAGCGAATTTCCTAATGTTCATCATCCAAAAGTGCAAACACTTGCACTT
ACATATGAAAAAATTGTTCACATTTCGGCAACAACAATTCGATGTTCTGTGGTTACTGAA
AGTGGAAAAATTGCAACATGGATAGATGAACAACTTGGATATGCAGGCAATAAATTAGAA
CATCAAGCAACAAGCTATCCTGAATTTACACTTGACAAAATAACTTCATTGCATACATGT
TCACTTTATACTATTGCTCGTACTGAATCAGGTGAATTATTTTGGTGGGGTGTACTGCCA
TTTAGTCAACGTAAGAAAATGTGGGAAAAATATAAAGCAAAATCGAAAAAGCCACAAAAG
AAGGACAAAGATAAAGATTCAACATTGAATGAAATTGTAGTTGGTGCACAAGTGTGTATG
AAAAATATTCCAATGTATCAGCCAGGTGCTATTGGCTTTTGTCTTTCTAATGGTATTCCC
AAAGTTGGTCAATTAATGAATGCAGCATGGGACCTTATGAATATCTGCCGTTTTAAGATT
CTTCCTATGCCACAACAAATGAGTACTTCTTCTACTTTATCATCTTCAATTAGTATTGAG
AAAGAATCAATGACTAAAATTACAACAAATAACAGTAACTCTAATTCAAGTGGTTCAACA
TCAAGTGCTGGTAATAAGGAAACAGCAGATCGTATGGACATGCCTCCACCACCATCACCA
GCAAGCTCTACATGCAGTGACACTTCAGTAAGTGTTAAAAGAAAACGCATCATTCAAAAA
GATGATTCTGATAACAAGAAAGATGAAGAATTGTGGAATTTAAAAGATGTCGTATTTGTT
GAAGATTTACGTTCGGTTCCAATTGGCAAAGTACTCAAAGTTGATGGTCAATATGCAGCA
GTTAGATTTCAGAATTCATCATCAAAAGACAAATTTGATGAAAGCTCTGTTGATGCATGG
CAGGAATGTCGTCTTTTACGTAAAGACGAGTTACAATTAATTAAATCAGCAACAAATTCA
CGTGTTCCTGATTGTATTCAAAAAATTCCACGTCGTGTGGTCCTAAATCAACAACTCAAT
GATAATTCTCAATTATTGGCTCTAACTGTTGATTCAAAAGGAATCCATACAATAATGAAA
AGTGGCCAAAAACTCCACTATTCACTCTTCAATTTAAGCAGTGGACGATTAGAAAAGTCA
AGTAATTTCCCGACTGATCTCAATTCTTTTATGGGCAAAACTCCACAAAATATTTCATTA
CAATGTGCTGGAGATCAGCAAGAAAGTATTTTAATTTTGAGAGATGGCAACAAAACAATT
TATCCGCTAGCTAAAGATTGTGTCGAAGCTGTTCGAGATCCAACATGGATGGATCTACCT
CCATTGAGTTGCATAGCTGTCACACCCGTTACTATACAATCAACTTCAAGCACAAAGACA
CAAATAACTTTGCTGGTTATGGCAACAGAACAACAGTTGTTAATGCCAAAAATTATGAGA
TGTGATGTTGATGCAGTGAAATACTTTTTACAACAGCTCAATGGTGAACTCAAGTCACAA
ATACAAGCAGTGGTTCAAGAATTTACTGATGGAAATCGCAACATTTTACATGCCTGTATT
ACACAATGCTCACCAACGTCAAATAAAGATTCAGATCAAGATCTTCTGTCGACTGCAAAT
TCAAATAATAATCCTGGTTTGGAGTGTATCAATACTATAACAAATACAATAATTGCATCG
CGTACAACTAGCAATATACGAGATCTAATGAGAAGATCATCATCTACATCAGCTTTGGCC
GGTGAAGTTCATCATTTATCAGCCTCTAATGTCTCTGTAACGTCAGCTGATGATAACTCA
GTTAATTTGTCATACTGGCAGACCGAATATGATGGAAATTCAGGTGATGAAGATAGTCTC
AGTGGTATTCATATTCCAAAAGCACAGCAACAAAATCAGCCGACTGAAATTTACATTTCT
GATCCCACTGAACGAAGAGTTAATGCCCTTCTGAGTGTTCAATTGATTTGTGAAAATGCT
GCATTGCAACCCTATTTAAGACAATTATTGAGTGCAAAAGATGCAACAGGTCAAACGCCA
TTTATGCTTGCTGTCTCTAGCCGCGCTTATCAGGCCGGAATTGTTCTTTTTGATACAATT
CTTAAAATTGCAAATGGTGATCCTCAAATTAGAGATTCAATGGTATTTCCAAATGGTTCA
CCCGATCAGTCTCCTCTTCATGTTCTATGTTGCAATGACACTTGTTCGTTTACATGGACT
GGTGCTGATCATATTAATCAAGATATTTTTGAATGTCAAACATGCGGTCTGAGTGGTTCA
TTATGTTGTTGCACTGAGTGTGCAAAAGTATGTCATAAAGGACATGACTGCAAATTGAAA
CAAACAACACCTACAGCATACTGTGACTGTTGGCAAAAATGCAAATGTAAAGCTCTTGTT
GCGGGAAACCAAACAAAACGAACGGAATTACTTGAGAAACTTATTAAAGATACAGATCTT
GTCATGCGTTTTAATTCTAGAGGAGAATCGATACTGCTATTTCTAATACAAACAGTTGGT
CGTCAATCTATTGAACAACGACAATATCGTTCAACAAGAGTTCAGCAACGTAATTCAGGA
AGTTATTTGAATAGAAAAACTCCATCAATTGATGCCGATGGTGAAATGCCTGAACATGAT
TTGGAGCCACCAAGGTTTGCAAGAAAAGCTCTTGAACGATTATTAGGCGATTGGAATGCT
GTGAGAAGTATGATTCAAACAGGAGTTGAAAGTGAATTTAATTTAAATACTTTGGCAAAT
CAAGTTTTTTATGAAGATAATGATAGCAAAAATCTATACATTAATTCTCAAAGTGGAACT
ATCATGTTGGATAAATTTACTCATATTTTATTTTTCCGATGCAACAATGAACCATTAGAT
GCACTACTTGCTACACTCATTAAAGAACTTCAAAATGACGCAATATCGGGTAGAATCGAA
GAAGCACAAAAAGTCGCTCGTCGTTTTGTGCGCTCAGTATCACGAGTTTTTGTTATTTTT
AGTATTGAGAAATCAAATAATCCTGATAAACAGAGAAACTCAACAATGCAAGCGCGTCTT
ATGCTAGCTTTTCGTCGTGTTTTCACTTCTCTTTTAAAATTTGCTATTGAAGAGCTTGTT
GAAATTTCCGATGCATTAATTGCTCCCGTAAGACTTGGTGTTGTTCGACCAACAGCTCCA
TTTCAATTGACTTCATCAGGCAACAATATGGATTCTGATGATTTGTTTTCTGTTGAACCT
CTTGCACCTGCTTCAAGGCAAAATAATCTCAGCGATGCTATACAATCTCGCATCGATAGC
GAGTCAACAGATGGTGGTTTTTTGCTTAGAATTTCATCAGCATCAAGAAATGAATTAGAT
GAAACAAATGATCCTGATGCAATGGTTCATGATGATGGAGACATATCAGAACAAGATGAC
TCTCAATCTGTTATACATTCAAGACAAAATATAAATAACAATAACAATAATAATGTCGTA
GATGATGTAGCTGATGACCAAATGGGACAAGATAATGGAGGAGAAAGTGATAATGAATTC
AATTTCCAAGAAGCCGAGACTGAAAGTGATTCTGATGATAATCAAAGCACTCAAGATGCA
GGACGTAGTGTTCAAACAGGTGCAACTGCAGGATCTGATACAGGTTTATCTAATTTCGTT
TTAATCAATGAAGATGACACAGGTGATTCCAGTCAACAAGATGAAGATGGTTCTGAGGAT
GGTGATAGTGATGAGCAGTCAACTGAAGAATTTGTACTAGATGATCAATTGGAAAGAAGA
ACTACATCTTCGGGATTGCAACGAAACAATGCTCCACCACATTCACTTCATTGGGCAATT
AGAAGTCGTGATACAACTCGAACAACAAGCCTTCATCGTTTGGCAGGAGCATCAAACCTT
GTATTTATTGATCCGAGTGCTATTCGACGATCAGCTTCTGCTAATACTGTTGCACAAGAG
TCACCAACAATGGCAACTACTTCAAGTGCTCTTGCTCGTGCATTTGGGATTGTACTTAGA
CAAATAAGTGAGTTAGTAGGAATGCTAGCTTGGAAGTTTAGTTGTCCATCATCAAACAAT
TATCAAAGCTATGATTTATCATATCAAGAAGCTGTTCAACTTCAGATGTATGTTGAGAGA
AGACTAAAGCCAACTTGGGATTGGATTTTGACAGTGATGGATGCAACAGAAGCTCAATTG
AGATTTGGAGCATCTCTTACTGATTCAGCAGATTCTGCTCATCCTTTACATCCTCACAAT
TCGAATTCAAATACTTCAACTTCAGCTGCAACGTCAAACGCGGGACCGCCACTAAATCAA
CGATCAAATAATCGTACAGTCACAATTCAAATGCTTACACCAAACAATAGTGGCAGTCGT
GTGCGTGATCGCAATGGTACAGACAGCTCTACAAGCCGTCGCGATTTTCTTACTTATTGT
CTTTCACTAATGCGAGCTCACAATTCAGAACATCGTGACTCGCTACCAGTTTTGGACGTG
ACTGCATTGAGGCATGTGGCATTCGTTTTAGATTCTATAATTTTCTATATGCGTGCATCT
AACGATTTGGACTGCGATCGCAATGATTCGAATGCATGGGATGATCAAGACGATAACGAA
AATGAAGATGTTGATGATGAGTTTACGTCATCGATTGTCATGGATACTGATTCGGTTGAT
GAAAATGATATGATAAGACCTACACTTGGAAAACGTCACAGTTTTTTCCAACGATCAGAG
TCGACACTTTGTCTTGGCTGTTCAGCACCTGATCCTTTCAATACGCCAATGGCTGAAGCT
ATTCCATTGGCGGAACAACCACAATTATTGCAACCAAATGCACGAAGAGAAGATCTTTTT
GGAATGCCTAAGCAAGCTATAACAGTGCCAGCAAGTGTTGATCAAATTACGTCATCAACA
CTTGAATTGCCGCCAATAAAATTAGGCCTATCTGCTCAATCGAAGGACGTACAACAAAAC
AGTGCAGGCAACACAAATACAGTTGTAATTTCTGTTACACCCTCAACATCAGAACAATCA
CAAAATGATGTTATAATACCTGAAGAAAAACAACAACTTGCTACGGTTCCTCAAAGTAAA
GAATTATCTAGTTTATTGAAACGACCTCATTCACCACAACCTGGACCATCAAAAGGATTT
CTTGAAAATTATGAAGACGATGATGATGAAAGCATTGACGATGAACCTCAAAATTTATCA
ATGACAAAAATGAATCAAATTGTTGATGAATCAAAAGTTGAAAAACATTTGTACGAAGAT
TCTGACGATAGTGAAAATGAAAATGATATTATTAGATCACCAGTTGCTAAGAAACATAGA
TTAATGGAAACTGGTGAAACAATAAAAGGTTTCTCAATTGGAAAATCAATGAAGCAAGCT
GATTCGGAGCAAGATATTGACCCATCGATTCGGCCACCAATAATAGTTGTTACACGTAGA
AATGTTGCTGATGCAATTGATGCTGCCACGGCCAACATTCTGTCAAAGAACAAAAAACAA
ACATTGAGCGAATGTGTTGCACCTGAAACACCTATAAATTTTTTGCCAAACAACTTTGTA
TATGAAAAAGGAAGTGAACATGAACAATCAGCATCAAGCAAATCAAGTGTGATCGTAAGA
GTTGGTCCATCGACTTCATCACAAGTTGATCCATCTTTAGATACAATGGATGAAAATCAA
GAAGTATCTGCAAATGTTACGATTGAAACCACAAACACTCCAAGTCAAAATCAACAAATT
GTTCAGGAACTTCCACCTCGAGGTGTATATTTCCGTTCGAACATAACTTCTGATTTACTA
CTTGGCAGATGGCGATTGTCTTTGATTCTTTTTGGTCGGGTATTTCAAGAAGATGTAGGA
ATGGAGCCTGGAAGCATTATTTCTGAACTTGGAGGATTTCCAGTAAAAGAAGCTAAATTT
AGAAGACATATGGAGAAATTGCGAAATGGACAGCAACGTGATCTTACACTGTCAAAAATT
GATCGAGCAAGAAATTGCCTCATTCCACAAACATTTAAGGAACTAAATACGCAATATAAT
AATAACAATAGACGACTTCAACCGCCATTGGCATTTAATCGTGTTAAAGTAACTTTTAAA
GATGAGCCAGGTGAGGGAAGCGGTGTAGCCAGAAGTTTCTATACACTCATAGCTGAAGCT
TTATTGTCTCGTGAAAATCTACCCAATCTCGAGAGCGCTCAAGTTGGTTCTAATAAATAC
AATGTGCCCTTCAGTACAATGATTAGACAACGAAATCCATCGGGAAGTAGTCAATCATCT
CCATCGGTTACAATTGCTAGCAATTTTTCAACAAATGTTCAATCTAGAGATCTATCAGAA
CCATTAAGACGATTGACATCAAAGCGTACTTTATGGAGGAATCGTGACAGTAGAAAAGTT
CTTTTAAATTATGATGCACGACCCTTTAGACCAGCAAGTGAAGGTGGCAGTAATGATCAC
TTAAGTAATCATCAACAACAGCTGGGTGAAAGAATTTACAATAAAGTTTATCAAATTCAT
CCAACGCAAGCAGCTAAAATTACAGGAATGCTGTTAGATCTACCACCAACGCAATGGATT
ATGTTAGTTTCATCAGATGAAACGTTGAGACAACGTGCTAATGAAGCTATGGCTCTCATT
ACATTTCGTCATCGCATGGATCGTGATGGAAGTAGTGCAAATTCAAGTGGCAGTGGAAAT
AACAACAATCCACAATTACCAACAGTTTCGCTCAATATCACGGGCTCTGCATCACTTGGT
TCAGCTACATTGAACATAATCAGTACTGATTCGTCACAAGGAAATAGTAGTATTAATGCG
CAACAAGGATCATCTTCATCATCATCGCAACAAGGATCTAAAAAATTGAATCCAATTGTT
GTACTTGAAGATTGTCAAAATCTAACTGTTGATGACAACGCACCATTATTCTATCAACCA
GGAAAGCCAAATTTCTACAGTCCAAGACAAGGCTATCCATCATTTGAGCGCATCAATGCT
TTTAGAAATGTTGGAAGATTAATTGGTTTATGCTTGCTACAAAATGAATTGTTGCCAATA
TTCCTTCAACGTCACGTTTTAAAATACATTCTTGGACGTCAAATTCGATTCCATGATTTA
GCATTTTTCGATCCAATTGTTTACGAATCGTTGCGACAATTGGTTAAAGATTCACAAAGT
AAAAATGGAGCGCAATTGCTGCAATCGCTCGAACTTAATTTTGTTATCGATTTGGTACCG
GAGGAGGGAGGTGGTTCTGTTGAATTGGTAAATAATGGTCGTGACATTATTGTTAACGAA
CAAAATGTATACGATTATGTTCGCAAATATGCTGAGTATCGCATGATAAAAACACAGGAG
AAAGCACTAGAAGCAATTCGATCTGGTGTTTTCGATGTCTTGCCTGAAACGGCGCTGGAT
TCATTGACAGCTGAGGATCTCAGACTTTTGCTAAACGGAGTTGGCGATATTAACGTATCA
GTTTTGTCAAACTATACTTCATTTAATGATGAATCAAATGAAAGTGCTGAGAAATTACAG
AGATTTAAACGTTGGCTTTGGCAAATCGTAGAACGAATGACTAATCTTGAACGTCAAGAT
TTGATATATTTCTGGACTGGATCACCTGCATTGCCTGCTTCAGAAGAGGGCTTTCAACCA
ATGCCAACAGTTACAATTCGTCCAGCAGATGATGCACACTTGCCAACAGCCAATACATGC
ATCTCTCGTCTCTATATACCATTGTACTCAAGTAAAGCCGTATTACGCCACAAATTATTG
ATGGCTATTAAAACTAAAAATTTTGGATTTGTTTAA

>g11643.t3 Gene=g11643 Length=3031
MSSLHFVVSIGGGDQLNDRIREVAEKINKYGTQTFPALHSLKIPVKQVVVGNSYLGVLLA
DGRAFRVAYSVIAERLDLSKQDSTNKNNGSGGSAGGNGTNNSGAGGSGSSSKNAQASSRQ
LARSTRARIMRTNGSSVRGQTSRSTGVIIGGTTSGRSLVHTVPATFVPEELISQAQVVLQ
GKSRNLIIRELQRTNLDVNLAVNNLLSRDDEEGEDTEEGSDNYVPEDLISLLDSGIHPDP
SLLLDNDAMFSEDMRTFRNLMLSSRDRMQSSSSQSANQSDSNNLRTSGSSTVSAVVTSGS
GSTSGTGASLSFGRIRDRTYFGPRRWFQSNREEVQWEKEQDSRSKMDTTASGFPLWISDD
LEFWPDKDGTRFIHIASLYSEFIAVSTKGELHQWRWTDREPYRNSEFPNVHHPKVQTLAL
TYEKIVHISATTIRCSVVTESGKIATWIDEQLGYAGNKLEHQATSYPEFTLDKITSLHTC
SLYTIARTESGELFWWGVLPFSQRKKMWEKYKAKSKKPQKKDKDKDSTLNEIVVGAQVCM
KNIPMYQPGAIGFCLSNGIPKVGQLMNAAWDLMNICRFKILPMPQQMSTSSTLSSSISIE
KESMTKITTNNSNSNSSGSTSSAGNKETADRMDMPPPPSPASSTCSDTSVSVKRKRIIQK
DDSDNKKDEELWNLKDVVFVEDLRSVPIGKVLKVDGQYAAVRFQNSSSKDKFDESSVDAW
QECRLLRKDELQLIKSATNSRVPDCIQKIPRRVVLNQQLNDNSQLLALTVDSKGIHTIMK
SGQKLHYSLFNLSSGRLEKSSNFPTDLNSFMGKTPQNISLQCAGDQQESILILRDGNKTI
YPLAKDCVEAVRDPTWMDLPPLSCIAVTPVTIQSTSSTKTQITLLVMATEQQLLMPKIMR
CDVDAVKYFLQQLNGELKSQIQAVVQEFTDGNRNILHACITQCSPTSNKDSDQDLLSTAN
SNNNPGLECINTITNTIIASRTTSNIRDLMRRSSSTSALAGEVHHLSASNVSVTSADDNS
VNLSYWQTEYDGNSGDEDSLSGIHIPKAQQQNQPTEIYISDPTERRVNALLSVQLICENA
ALQPYLRQLLSAKDATGQTPFMLAVSSRAYQAGIVLFDTILKIANGDPQIRDSMVFPNGS
PDQSPLHVLCCNDTCSFTWTGADHINQDIFECQTCGLSGSLCCCTECAKVCHKGHDCKLK
QTTPTAYCDCWQKCKCKALVAGNQTKRTELLEKLIKDTDLVMRFNSRGESILLFLIQTVG
RQSIEQRQYRSTRVQQRNSGSYLNRKTPSIDADGEMPEHDLEPPRFARKALERLLGDWNA
VRSMIQTGVESEFNLNTLANQVFYEDNDSKNLYINSQSGTIMLDKFTHILFFRCNNEPLD
ALLATLIKELQNDAISGRIEEAQKVARRFVRSVSRVFVIFSIEKSNNPDKQRNSTMQARL
MLAFRRVFTSLLKFAIEELVEISDALIAPVRLGVVRPTAPFQLTSSGNNMDSDDLFSVEP
LAPASRQNNLSDAIQSRIDSESTDGGFLLRISSASRNELDETNDPDAMVHDDGDISEQDD
SQSVIHSRQNINNNNNNNVVDDVADDQMGQDNGGESDNEFNFQEAETESDSDDNQSTQDA
GRSVQTGATAGSDTGLSNFVLINEDDTGDSSQQDEDGSEDGDSDEQSTEEFVLDDQLERR
TTSSGLQRNNAPPHSLHWAIRSRDTTRTTSLHRLAGASNLVFIDPSAIRRSASANTVAQE
SPTMATTSSALARAFGIVLRQISELVGMLAWKFSCPSSNNYQSYDLSYQEAVQLQMYVER
RLKPTWDWILTVMDATEAQLRFGASLTDSADSAHPLHPHNSNSNTSTSAATSNAGPPLNQ
RSNNRTVTIQMLTPNNSGSRVRDRNGTDSSTSRRDFLTYCLSLMRAHNSEHRDSLPVLDV
TALRHVAFVLDSIIFYMRASNDLDCDRNDSNAWDDQDDNENEDVDDEFTSSIVMDTDSVD
ENDMIRPTLGKRHSFFQRSESTLCLGCSAPDPFNTPMAEAIPLAEQPQLLQPNARREDLF
GMPKQAITVPASVDQITSSTLELPPIKLGLSAQSKDVQQNSAGNTNTVVISVTPSTSEQS
QNDVIIPEEKQQLATVPQSKELSSLLKRPHSPQPGPSKGFLENYEDDDDESIDDEPQNLS
MTKMNQIVDESKVEKHLYEDSDDSENENDIIRSPVAKKHRLMETGETIKGFSIGKSMKQA
DSEQDIDPSIRPPIIVVTRRNVADAIDAATANILSKNKKQTLSECVAPETPINFLPNNFV
YEKGSEHEQSASSKSSVIVRVGPSTSSQVDPSLDTMDENQEVSANVTIETTNTPSQNQQI
VQELPPRGVYFRSNITSDLLLGRWRLSLILFGRVFQEDVGMEPGSIISELGGFPVKEAKF
RRHMEKLRNGQQRDLTLSKIDRARNCLIPQTFKELNTQYNNNNRRLQPPLAFNRVKVTFK
DEPGEGSGVARSFYTLIAEALLSRENLPNLESAQVGSNKYNVPFSTMIRQRNPSGSSQSS
PSVTIASNFSTNVQSRDLSEPLRRLTSKRTLWRNRDSRKVLLNYDARPFRPASEGGSNDH
LSNHQQQLGERIYNKVYQIHPTQAAKITGMLLDLPPTQWIMLVSSDETLRQRANEAMALI
TFRHRMDRDGSSANSSGSGNNNNPQLPTVSLNITGSASLGSATLNIISTDSSQGNSSINA
QQGSSSSSSQQGSKKLNPIVVLEDCQNLTVDDNAPLFYQPGKPNFYSPRQGYPSFERINA
FRNVGRLIGLCLLQNELLPIFLQRHVLKYILGRQIRFHDLAFFDPIVYESLRQLVKDSQS
KNGAQLLQSLELNFVIDLVPEEGGGSVELVNNGRDIIVNEQNVYDYVRKYAEYRMIKTQE
KALEAIRSGVFDVLPETALDSLTAEDLRLLLNGVGDINVSVLSNYTSFNDESNESAEKLQ
RFKRWLWQIVERMTNLERQDLIYFWTGSPALPASEEGFQPMPTVTIRPADDAHLPTANTC
ISRLYIPLYSSKAVLRHKLLMAIKTKNFGFV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g11643.t3 CDD cd14423 CUE_UBR5 166 208 2.56286E-21
14 g11643.t3 Coils Coil Coil 3031 3031 -
9 g11643.t3 Gene3D G3DSA:1.10.8.10 DNA helicase RuvA subunit 160 212 3.2E-31
8 g11643.t3 Gene3D G3DSA:2.130.10.30 - 359 541 1.7E-7
11 g11643.t3 Gene3D G3DSA:3.90.1750.10 Hect 2383 2514 7.1E-6
10 g11643.t3 Gene3D G3DSA:1.10.1900.10 - 2584 2643 3.3E-20
12 g11643.t3 Gene3D G3DSA:3.30.2160.10 Hect 2793 2878 6.5E-11
13 g11643.t3 Gene3D G3DSA:3.30.2410.10 Hect 2915 3031 9.2E-44
33 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 83 143 -
25 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 264 300 -
20 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 606 664 -
28 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 606 627 -
26 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1275 1297 -
27 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1603 1696 -
24 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1614 1647 -
21 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1648 1671 -
30 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1831 1865 -
23 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1834 1865 -
32 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 1871 1890 -
22 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 2110 2198 -
31 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 2110 2126 -
19 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 2168 2198 -
29 g11643.t3 MobiDBLite mobidb-lite consensus disorder prediction 2285 2311 -
4 g11643.t3 PANTHER PTHR46276 E3 UBIQUITIN-PROTEIN LIGASE UBR5 1 3031 0.0
1 g11643.t3 Pfam PF11547 E3 ubiquitin ligase EDD 162 211 4.8E-31
2 g11643.t3 Pfam PF00658 Poly-adenylate binding protein, unique domain 2579 2640 7.0E-20
3 g11643.t3 Pfam PF00632 HECT-domain (ubiquitin-transferase) 2731 3030 3.9E-64
36 g11643.t3 ProSiteProfiles PS50030 Ubiquitin-associated domain (UBA) profile. 166 208 8.547
35 g11643.t3 ProSiteProfiles PS51157 Zinc finger UBR-type profile. 1153 1221 8.464
34 g11643.t3 ProSiteProfiles PS51309 Poly(A)-binding protein C-terminal (PABC) domain profile. 2568 2645 16.12
37 g11643.t3 ProSiteProfiles PS50237 HECT domain profile. 2747 3031 66.612
16 g11643.t3 SMART SM00396 push_1 1153 1220 2.5E-23
18 g11643.t3 SMART SM00517 poly_2 2580 2643 6.9E-25
17 g11643.t3 SMART SM00119 hect_3 2623 3031 1.4E-120
7 g11643.t3 SUPERFAMILY SSF50985 RCC1/BLIP-II 364 503 8.11E-16
5 g11643.t3 SUPERFAMILY SSF63570 PABC (PABP) domain 2582 2643 2.62E-18
6 g11643.t3 SUPERFAMILY SSF56204 Hect, E3 ligase catalytic domain 2740 3024 1.83E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0043130 ubiquitin binding MF
GO:0003723 RNA binding MF
GO:0008270 zinc ion binding MF
GO:0004842 ubiquitin-protein transferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values