General information for g11697.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein spartin.
Parent gene
- The parent gene g11697 is located on chr_1: 17831850..17840054 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11697 | g11697.t6 | TSS | g11697.t6 | 17829115 | 17829115 |
| chr_1 | g11697 | g11697.t6 | isoform | g11697.t6 | 17830071 | 17832235 |
| chr_1 | g11697 | g11697.t6 | exon | g11697.t6.exon1 | 17830071 | 17830187 |
| chr_1 | g11697 | g11697.t6 | cds | g11697.t6.CDS1 | 17830071 | 17830187 |
| chr_1 | g11697 | g11697.t6 | exon | g11697.t6.exon2 | 17830249 | 17831419 |
| chr_1 | g11697 | g11697.t6 | cds | g11697.t6.CDS2 | 17830249 | 17831419 |
| chr_1 | g11697 | g11697.t6 | exon | g11697.t6.exon3 | 17831913 | 17832235 |
| chr_1 | g11697 | g11697.t6 | cds | g11697.t6.CDS3 | 17831913 | 17832235 |
| chr_1 | g11697 | g11697.t6 | TTS | g11697.t6 | 17832347 | 17832347 |
Sequences
>g11697.t6 Gene=g11697 Length=1611
ATGTGCAGTGTTGAAGAATTTAATGAAATATTTTGTAAATTTCAAAAAATTTACGATGAT
TGTAATAAATTATTGACTCGTGGAATAAATGAGGAAGAAACATCAAATGAAGAATCGGCA
CTCAGAACATACAAAGAAGCAATTGAGTTAATTGACAAAGCTATGTTAATCCCAATTTCA
TTTCCATCAATGGAAGAGCAAGATGAAAACAAAGATATTGATAAGAAAATCAAAGATCTG
AAAAGAATAATTTATAATTTTAAGATGCAAAGGTCTGAAATACTTCTTAGAATTGGAACT
ATATTTAGGAAAAAAGAGCATGAAGAGGCTGAAAATTTAATGAAAAAACAAAAAATATCT
TCGGATAGTTGTAGTGAAGAAGAAAAACCAAAAATGCGGGCTCGTACATATATGGAGCTA
GAAAATGTATTGACTAATTTGGGAAAAGTTTCAGATGGTGATGACGGAAAAAATATTCTT
GAAATTCTTTTTTGCTGTAGCGGCGTTAAACTTTATTATATAGAGCAAAATGCTGATGTT
ATAAGCTCTTTAGAAGAGTTTGTATTGAGAATTATCAAATTAGGATCAGATTTTGAAAAT
AACTTAGAAGAGACTCTTTTTCTTCAACTTATTAAATCTTCAGATACCTCAATTGATATT
GGTGAAGAAATAACTGAAGATCAGTGTGCTGGTTCATCCGATTCTATAAATGTAAATGAA
AAAGAACAAAAAGCAGATCCGAGTTTTATTTATCCACTTATTCCTGGAGTAAGTCCACTA
TTTCGAACGAAATTCAACGCTTTTGTTCTCCCTGATCTACAAACTAATGATGGAAGTGCT
ATTGGTCTTCAGATTTGTAATCCAGAAACTGATGAGCTTGTACTCGATATATTGGTAACA
ATATTGAAAGGTGTAGTAAAAGAAAATGGTGAAATTGAGTTTGCAGATTTTACAAAGATT
AAAGATGAAAGTCAAAGAGTAAAGAGATCAACTGGAGAAAAATTTTCAGAGAACCTTGTT
TCTGGAGCTCATTGGATATCACAAGGACTAGTTTGCAGTGCGCAAAAAACAGGAGAATTT
ATAGATTACTCAACACCCTATATACTATCAAGAGTGCAACAAGCTGAAGATAGTGCACCT
CCCGTTTCTACTAAACTAAATACATCAGTTACCGTAGCGAGATCATTAAGCGGATATGCA
GCACAAGGAACATCGTTTCTAGCTGAAAAAGTTGGAGTTACCATGTCAAACTTTGGTAAA
TTTTTAGCACCTCATGTGCAACAACAAGAAACAAGTGCAAGCATTTTGGGAAGAAATTTA
GCAGAAAATTCAGTGAAATTTGTTAGGTATAAATATGGAGAATCTTATGGAGAAATATCC
GAAAAAGGTTTTGATACAGTTGGAAATTTGATAGCAGTAAATAGAAGTTTTAATATACTA
ACACCAAAAGGATTAGTCAAAAGTACAGCAAAGAGTGCTGGAAAGGGCATTCTTAATGCA
GAAGAATTTAAACCAAAAGCTTACATAAATAAAGATTATTTTACAGGCAATACAAGACTC
ATTCCGAATCTGGATAATTTTGCAAAGGAAATAACAAAACCTAAAATTTAA
>g11697.t6 Gene=g11697 Length=536
MCSVEEFNEIFCKFQKIYDDCNKLLTRGINEEETSNEESALRTYKEAIELIDKAMLIPIS
FPSMEEQDENKDIDKKIKDLKRIIYNFKMQRSEILLRIGTIFRKKEHEEAENLMKKQKIS
SDSCSEEEKPKMRARTYMELENVLTNLGKVSDGDDGKNILEILFCCSGVKLYYIEQNADV
ISSLEEFVLRIIKLGSDFENNLEETLFLQLIKSSDTSIDIGEEITEDQCAGSSDSINVNE
KEQKADPSFIYPLIPGVSPLFRTKFNAFVLPDLQTNDGSAIGLQICNPETDELVLDILVT
ILKGVVKENGEIEFADFTKIKDESQRVKRSTGEKFSENLVSGAHWISQGLVCSAQKTGEF
IDYSTPYILSRVQQAEDSAPPVSTKLNTSVTVARSLSGYAAQGTSFLAEKVGVTMSNFGK
FLAPHVQQQETSASILGRNLAENSVKFVRYKYGESYGEISEKGFDTVGNLIAVNRSFNIL
TPKGLVKSTAKSAGKGILNAEEFKPKAYINKDYFTGNTRLIPNLDNFAKEITKPKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11697.t6 | Coils | Coil | Coil | 63 | 83 | - |
| 3 | g11697.t6 | PANTHER | PTHR21068 | SPARTIN | 16 | 425 | 7.8E-41 |
| 5 | g11697.t6 | PANTHER | PTHR21068:SF20 | SPARTIN | 16 | 425 | 7.8E-41 |
| 4 | g11697.t6 | PANTHER | PTHR21068 | SPARTIN | 430 | 502 | 7.8E-41 |
| 6 | g11697.t6 | PANTHER | PTHR21068:SF20 | SPARTIN | 430 | 502 | 7.8E-41 |
| 2 | g11697.t6 | Pfam | PF06911 | Senescence-associated protein | 339 | 431 | 1.0E-11 |
| 1 | g11697.t6 | Pfam | PF06911 | Senescence-associated protein | 430 | 473 | 4.8E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed