General information for g11713.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as CAAX prenyl protease 1-like protein.
Parent gene
- The parent gene g11713 is located on chr_1: 18019916..18022003 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11713 | g11713.t5 | TTS | g11713.t5 | 18019073 | 18019073 |
| chr_1 | g11713 | g11713.t5 | isoform | g11713.t5 | 18019252 | 18020817 |
| chr_1 | g11713 | g11713.t5 | exon | g11713.t5.exon1 | 18019252 | 18019276 |
| chr_1 | g11713 | g11713.t5 | cds | g11713.t5.CDS1 | 18019253 | 18019276 |
| chr_1 | g11713 | g11713.t5 | exon | g11713.t5.exon2 | 18019341 | 18019559 |
| chr_1 | g11713 | g11713.t5 | cds | g11713.t5.CDS2 | 18019341 | 18019559 |
| chr_1 | g11713 | g11713.t5 | exon | g11713.t5.exon3 | 18019627 | 18020524 |
| chr_1 | g11713 | g11713.t5 | cds | g11713.t5.CDS3 | 18019627 | 18020100 |
| chr_1 | g11713 | g11713.t5 | exon | g11713.t5.exon4 | 18020597 | 18020668 |
| chr_1 | g11713 | g11713.t5 | exon | g11713.t5.exon5 | 18020740 | 18020817 |
| chr_1 | g11713 | g11713.t5 | TSS | g11713.t5 | 18020895 | 18020895 |
Sequences
>g11713.t5 Gene=g11713 Length=1292
ATGAGTTTAGTACTTTATTCAATCATTGGTTTTCTAATATGTGAAAATTTGTTTGAACTT
TACCTTACGTTTAGACAGTTATAAAAATAGTAAGGAAGTTCCTAATGAATTAAAAGACGC
TCTCAAAAAGGAGACTTTTGAAAAAGCAAGACTCTATGGACGAGATAAAGCGGAGTTTGA
AATTTTTAAATCTATTCTTTGTGACATTATAATTGTCTCGATTGAATTATATTGTGGTTT
CGTTGCCTATTTGTGGAATGAAGCAGTAGTTTATACAGGAAGAATTCATCTAAATCCAGC
AAATGAAATTCATGTTTCTTGTGTTTTTCTAGTTTTAGTCAATATTATTGGAATTTTTAA
AGATTTGCCATTTAGCATCTATTCGACATTTGTATTAGAAGAAAAACATGGATTTAACAA
ACAAACAGCATCATTCTTTATCAAAGATCAAATTAAGGCATTTGCAGTTGGTCAAGCAAT
TTCTTGTCCTATAGTTGCTGCAATCGTTTGGATTGTGCAAATTGGTGGCGAATACTTTTT
CATTTGGTTATGGGCTTTTGTAGGGGTGATTTCTATGCTCTTAATCACATTATATCCGGT
TTATATTGCACCACTGTTTGACAAATTCAGACCTCTCGAACAAGGAAAATTGCGATCATC
AATTGAAGAACTTGCAGCTTCATTGAACTTTCCATTGGGCCAATTGTTCATTGTAGAAGG
TTCAAAAAGATCTCATCATTCAAATGCATACTTCACAGGATTATGGGGAGTGAAGAGAAT
CGTACTTTTCGATACACTTTTGCTTAATAAAGGACTAGAAGATGATAGCACACTAGCTGA
AGATGAAAAAGGCAAAGGATGCACCGATGAAGAAATTTTAGCTGTACTAGCTCATGAATT
AGGACATTGGAAACTCGGGCACATGACAAAAAACATTATTATAATGCAGATTCAACTCTT
TCTTGTTTTCATCATGTTTTCATACCTTTTCAAATTCGGTGCATTATATGAAGCTGTAGG
ATTTACTAATGCAAAGCAACCAATTATTGTCGGATTCTTGGTAGTCATTATGTATGTACT
TGCACCATTTAATACAATTGTCAGTTTTGGAATGACACTATTGTCTAGAAAGTTTGAATA
TGAAGCAGATGCATTTGCTAATAATCTTGGATTTGGATCTGATTTGTGTAAGTCATTAAT
TAAATTGCATATAGATAATTTGGGCTTTCCTTACTACGATTATTTGTATAGCAGTTGGAA
TCATTCCCATCCAACTCTTCTACAACGAATGA
>g11713.t5 Gene=g11713 Length=239
MLLITLYPVYIAPLFDKFRPLEQGKLRSSIEELAASLNFPLGQLFIVEGSKRSHHSNAYF
TGLWGVKRIVLFDTLLLNKGLEDDSTLAEDEKGKGCTDEEILAVLAHELGHWKLGHMTKN
IIIMQIQLFLVFIMFSYLFKFGALYEAVGFTNAKQPIIVGFLVVIMYVLAPFNTIVSFGM
TLLSRKFEYEADAFANNLGFGSDLCKSLIKLHIDNLGFPYYDYLYSSWNHSHPTLLQRM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g11713.t5 | CDD | cd07343 | M48A_Zmpste24p_like | 1 | 238 | 5.22155E-103 |
| 6 | g11713.t5 | Gene3D | G3DSA:3.30.2010.10 | Metalloproteases (zincins) | 16 | 115 | 2.5E-37 |
| 2 | g11713.t5 | PANTHER | PTHR10120:SF24 | CAAX PRENYL PROTEASE 1 HOMOLOG | 1 | 239 | 4.7E-83 |
| 3 | g11713.t5 | PANTHER | PTHR10120 | CAAX PRENYL PROTEASE 1 | 1 | 239 | 4.7E-83 |
| 1 | g11713.t5 | Pfam | PF01435 | Peptidase family M48 | 20 | 239 | 3.7E-38 |
| 7 | g11713.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 120 | - |
| 11 | g11713.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 121 | 145 | - |
| 9 | g11713.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 146 | 156 | - |
| 10 | g11713.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 176 | - |
| 8 | g11713.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 177 | 239 | - |
| 4 | g11713.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 122 | 144 | - |
| 5 | g11713.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 179 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008233 | peptidase activity | MF |
| GO:0006508 | proteolysis | BP |
| GO:0004222 | metalloendopeptidase activity | MF |
| GO:0071586 | CAAX-box protein processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed