General information for g11722.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Phosphatidylinositol 3-kinase catalytic subunit type 3.
Parent gene
- The parent gene g11722 is located on chr_1: 18076751..18077285 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11722 | g11722.t8 | isoform | g11722.t8 | 18076751 | 18077285 |
| chr_1 | g11722 | g11722.t8 | exon | g11722.t8.exon1 | 18076751 | 18077285 |
| chr_1 | g11722 | g11722.t8 | cds | g11722.t8.CDS1 | 18076752 | 18077285 |
| chr_1 | g11722 | g11722.t8 | TSS | g11722.t8 | 18077359 | 18077359 |
| chr_1 | g11722 | g11722.t8 | TTS | g11722.t8 | NA | NA |
Sequences
>g11722.t8 Gene=g11722 Length=535
ATGGACGATAACGTATTTCGATACATTTACAGTTGTTCCTTAGAGCAAAGAGTGCAAATT
AAAATAGGCTCTTTAGATGGATCTGCACTGAATAAACCTGATTTTGAAAAATTGCTTTCA
AATCCAAATTTATGTCATTCTGGACTTTATTCAGACCCATGTGCGCCATTTCTCGTGAAA
ATTCAATGCTATAATAACAAAAAACCATTTGGACTTGCTGTGAACACTTCATATAAAGCC
TTTAGTAAAAGATGGAATTGGAATCAATGGATTGTTCTACCTTTTAATTATTGCGATTTA
CCTCGTAATGCAGTCCTTTGTTTTACAATTTACGATTGTACTGGAGCAGGTGAAATGTCA
GTGATCGGTGGAACATCAATTTCTATCTTTGGCAAACATGGAATCTTCCGAGAGGGAATG
TTCGATTTAAAAGTTTGGCCCAATCAAATAGCTGATCCAATTGCGACTCCAGGAAAATGT
AAAAGTGACTCTAATGATATGACTCAACATCAAATGCAACGTCTTGCAAAATTGG
>g11722.t8 Gene=g11722 Length=178
MDDNVFRYIYSCSLEQRVQIKIGSLDGSALNKPDFEKLLSNPNLCHSGLYSDPCAPFLVK
IQCYNNKKPFGLAVNTSYKAFSKRWNWNQWIVLPFNYCDLPRNAVLCFTIYDCTGAGEMS
VIGGTSISIFGKHGIFREGMFDLKVWPNQIADPIATPGKCKSDSNDMTQHQMQRLAKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11722.t8 | CDD | cd08397 | C2_PI3K_class_III | 25 | 178 | 0.000 |
| 4 | g11722.t8 | Gene3D | G3DSA:2.60.40.150 | - | 13 | 173 | 0.000 |
| 1 | g11722.t8 | Pfam | PF00792 | Phosphoinositide 3-kinase C2 | 56 | 174 | 0.000 |
| 5 | g11722.t8 | ProSiteProfiles | PS51547 | Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile. | 35 | 178 | 33.889 |
| 3 | g11722.t8 | SMART | SM00142 | pi3k_hr3_6 | 20 | 130 | 0.000 |
| 2 | g11722.t8 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 38 | 157 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
