Gene loci information

Transcript annotation

  • This transcript has been annotated as E3 ubiquitin-protein ligase TRIP12.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11771 g11771.t1 isoform g11771.t1 18346880 18357185
chr_1 g11771 g11771.t1 exon g11771.t1.exon1 18346880 18347337
chr_1 g11771 g11771.t1 cds g11771.t1.CDS1 18346880 18347337
chr_1 g11771 g11771.t1 exon g11771.t1.exon2 18347395 18347596
chr_1 g11771 g11771.t1 cds g11771.t1.CDS2 18347395 18347596
chr_1 g11771 g11771.t1 exon g11771.t1.exon3 18347663 18347851
chr_1 g11771 g11771.t1 cds g11771.t1.CDS3 18347663 18347851
chr_1 g11771 g11771.t1 exon g11771.t1.exon4 18347924 18348481
chr_1 g11771 g11771.t1 cds g11771.t1.CDS4 18347924 18348481
chr_1 g11771 g11771.t1 exon g11771.t1.exon5 18348558 18348854
chr_1 g11771 g11771.t1 cds g11771.t1.CDS5 18348558 18348854
chr_1 g11771 g11771.t1 exon g11771.t1.exon6 18348921 18349321
chr_1 g11771 g11771.t1 cds g11771.t1.CDS6 18348921 18349321
chr_1 g11771 g11771.t1 exon g11771.t1.exon7 18349382 18349523
chr_1 g11771 g11771.t1 cds g11771.t1.CDS7 18349382 18349523
chr_1 g11771 g11771.t1 exon g11771.t1.exon8 18349586 18349783
chr_1 g11771 g11771.t1 cds g11771.t1.CDS8 18349586 18349783
chr_1 g11771 g11771.t1 exon g11771.t1.exon9 18349988 18350644
chr_1 g11771 g11771.t1 cds g11771.t1.CDS9 18349988 18350644
chr_1 g11771 g11771.t1 exon g11771.t1.exon10 18351224 18351398
chr_1 g11771 g11771.t1 cds g11771.t1.CDS10 18351224 18351398
chr_1 g11771 g11771.t1 exon g11771.t1.exon11 18351467 18352028
chr_1 g11771 g11771.t1 cds g11771.t1.CDS11 18351467 18352028
chr_1 g11771 g11771.t1 exon g11771.t1.exon12 18352083 18355097
chr_1 g11771 g11771.t1 cds g11771.t1.CDS12 18352083 18355097
chr_1 g11771 g11771.t1 exon g11771.t1.exon13 18355778 18355910
chr_1 g11771 g11771.t1 cds g11771.t1.CDS13 18355778 18355910
chr_1 g11771 g11771.t1 exon g11771.t1.exon14 18355980 18356923
chr_1 g11771 g11771.t1 cds g11771.t1.CDS14 18355980 18356923
chr_1 g11771 g11771.t1 exon g11771.t1.exon15 18356996 18357185
chr_1 g11771 g11771.t1 cds g11771.t1.CDS15 18356996 18357185
chr_1 g11771 g11771.t1 TSS g11771.t1 NA NA
chr_1 g11771 g11771.t1 TTS g11771.t1 NA NA

Sequences

>g11771.t1 Gene=g11771 Length=8121
ATGGCCGAATCTGGTAATAAAAAATTGCTCTCTGCATTGACGGAGGGGCATGACAAAGAA
TTGAGATCATCGGCAAGAATAGTAAAATCATCAGTAGAGAAAGAGAAAAATACATTATCT
ATAAACAGTGGAAGCAATAATAAATCTTTGTCATCAAAAACACAAAAAAAAGTAGTTGGT
GGCTCTAAATATAATAAAAATAAATCTTTAAGATCTGAAAATACAGTTCAACCATCAAAT
AGTAATACATCAAGTCGAAAACGTTTTTTGAATATTTTGTTGAATTCAAACAGCTCAACA
GAAGAAGATAGTGAAGAAGAATCTACTGTAACCACTGTCAAAAAAGCAAGACGTCGGCGA
AGAAATTTCTCAAGTTCTACATCATCTTCTTATACATCGTCATCACTTACAACAAATTCA
AATTCAAATAATATTGGAAATATCACTTCTTCTTCAACTCAACAACAATTAAAATCACAA
TTGTCTATAGCATATCATACTCGATCAAGAACACAGTCTGTTGAACACAACGAAATAGAT
TCTCCATCTAAAAACGATACTAAACGTTCTAGAGGATCAGCAAAAAAAATTGGAAATAGT
GATAGAGAAGAGTGCAAATCAAGCTTTGAAGAATTAGTAAATAGTGTAAAGAAGCCAAAA
GAAAATATTAAGAAAACGGAAGTTGATCATACAACTGAAAATTCACAAAAAAAATTACGA
AAACTGAGATCTTTCTCAAAAGTGAGTTTAACTGACGAAGAAGAAGAAGAGTCTTCATCT
TTTAAACATAATTTACGTCGCAAAACACCATCAATTTCATCTCCAAGTGTCATACCAAAA
AAACGTCAGCGAATAAGTGATACAAACAGTCGTGTATCAGTAGAAGAACGTAATAAAGAA
CTCGATATTAGAATAAGCAGTAAAGCGAAAAATTTAAAAGAAGAAGAACTGGGTGCACGT
TTGGCCCGAGGCGGAAGGGAGCCCCAGTTTGTCGATCAAGATTTAACACAACCATCAACA
AGCTCTCAAATAAATTCACAGGGGCACCTTCCATCGACACAAATAGCCACAACTTCACAA
AATTTGCTTCGGCGAAGCTCTCGTGGCAAAACATCGTACACAACGGGTTCTTGCGTTTCA
TCAACGGCTTCTACCAATACTGTTGCGGCAACATCAACGTCTTCTTCGTCAAGAACATCA
AATCGTAACGTAGGAGCAAAAGGAGGAGGCAATAGTAATAAGCATCAACTGTTTAGTACT
TCAAGTGGTAATCTAGATTTAGAATCTGTAGTTGGAACTTCATCAACTCGTCCTAGCACT
TCACAATTCACAATGTCAAATAACGATGGATCAAGAAGTAATGATCAACAGTCACAACAA
CAGACGTCATCATCTGCTCCAACATTTCTATTTTTTCACAAATCGAATTCAAATAACACA
GGATCTAATGATAATACTACAACAATTTATGTTCCGACCGCATCAACTTCAGCTCAACAA
AGTACTCACGCTTCAGTTTTAGTAGCAGGTACATCATCATCAAATGTCAGCTCTCAACAA
CCTGGTACATCAGGAGGAGCACTTCATCCAGATTCTGAGAGTGATGATAGTGAAGTTGGA
CGCTTACAAGCTTTACTTGAAGCTAGAGGCCTTCCGCCACAACTTTTTTCCGCACTTGGA
CCTCGTATGCATCATTTATTACATCGGACAATGGGTACAAATAGTTCCTCAAAAGCTCAG
CAATTACTGCAAGGTCTACAATGTAACGACGAAAGTCAGCAACTCCAAGCTGCAATAGAA
ATGTGTGAAATGCTTGTAATGGGAAATGAAGATACACTTGCTGGGTTCCCGATTAAACAA
GCAGTACCTGCACTTATTAATTTGGTTCGAATGGAACATAATTTTGATATGATGAATCAC
GCGTGTCGAGCTTTTGTTTATATGCTTGAAGCACTTCCACGTTCATCTGGAACTGTTGTT
GATGCAATTCCTGCTCTACTTGAAAAATTACAAACTATTCAGTGTATGGATGTTGCAGAG
CAAAGTCTTACGGCTTTAGAAATTTTATCAAAACGACATAATAAGGCTATTCTGCAAGCA
AATGGAGTCTCTGCATGTCTTACATTTTTGGAATTCTTTTCAACAAATGCACAACACGCC
GCACTAGCAATAACAGCTAATTGTTGTTTAAATTTACAAACTGAAGAATTCCAATTTGTA
AAGGAATCACTACCATTGCTGGCTCGTCTTTTATCGCAACATGATAAGAAAAGTGTAGAG
CGTATTTGCAATGCATTCTATCGTCTTATTGATAGTTTTCAACATGATCCTGTAATTTTG
CAAGAGATTGCTAGCATGGAGTTATTAAAGAATTGTCAACAATTACTCGTTGTAACACCT
CCTGTTCTCAACACTGTAACTTTCACAAATGTAGTACGAATGATGAGTGTGATGTGTGCA
AATTGTCCTGATTTGGCAATTACTTTACTAAAGAACGATATTGCATCAACATTACTGTAT
TTATTGACAAATTCAGCAACACGTACATCAAATGTAGAAGTTGAACTAGTACAACGTAGT
CCATCAGAATTGTATGAAATTACATGCTTAATTGGAGAATTAATGCCAAGATTACCAAAT
GATGGAATTTTCGGAGTTGATATGTTATTAGAAAGATCAAATAATACTGCTCAAGATGCT
ATTCAGTGGCAATGGCGTGATGAAAAAGGTATATGGCGTCCTTATTCTGCTATTGATTCC
AGAATTATTGAAGCAGCTCATCAGAATTCAGATGAAGAAATTAGTCTAAGTACAATGGGA
AGAACATATACTATTGATTTTCATGCCATGCAACAAATTAATGAAGATAGTGGAACAACA
CGTGCCGTTCAACGTAAAATCAATACTCATATTGAACAGACACAAGTTGTTTTGTCAAAT
ACTGGAAATGTTGGAGTTAATAGTGGTAGTGGTGGTATGGATAATGAAGGGTTTTCAGGT
ATGATTAATCTCTCAACAAGACCACCGAGTGCAACACGAGACGCTCGAATTGCCTGCCTT
AAAGAAGAACGTGGTTTAGCTGCAGAATTTATTAAAAATTTATTTTCGGTTCTTTATGAA
GTATATAGTTCTTCTGCTGGGCCTTCTGTACGCTATAAATGTTTAAGAGCCCTATTGAGA
ATGGTTTATTTTGCTAATGCTGATTTGCTTAAAGAAGTACTAAAGAATCAATTGGTCTCC
TCTCACATTGCCGGTATGATGGCTTCTAATGATCTCAGAATTGTAGTTGGTGCTTTGCAG
ATGGCAGAAATCCTTATGCAAAAGCTTCCCGATGTTTTTGGTGTACATTTTAGACGTGAA
GGTGTTATGCATCAAATAAATCAACTTGCTGATCCTTTAGTACCCATATGCTCTGCACCT
TCACCAAAATCAAATTTACAAACGACAAGTGCACCACCAAGCGCAAATCTTACAACAACA
ACAGCTCAAATGACACAATTTGATTTTGAGACAATTACTCAAAAAGGAGGTGTATCAGGT
CTACCAGGAACGAGTTCTCAAGCGCATGTTAAAAACTTAAATGCTTCACTTGCATCAGCA
AGTAAAATGACTACAATGACAATGCCCTCTACAAGTGCATCTTTATTGCCATCTGCTCAA
ATAGTTGGTACTCCGGGAACTTTTGCTATTAATTTGAATACAGCAAATGTATCAGGGAAC
AAATTAATGAATACGAACACTACACTTGATACTTTAAATAATGCTTCAGCTTCTACAACT
CCTTCTCCTAATGGAAATTTACTTATGAATGCTATTTATCATATTCCCGAACCAAATGCA
TTGCGAAATTATCATGGTGGCTATCATCATCATCCTGGTTTACATGGAGGAAATATTTAT
TCTACAACAGTTCCACAGTCAAATAATATGTATCAGTCTGTTGTAGCGTCGGCAGCTCCT
GTTCATCATCTTCATCATCATCATCATAGTCATCATACTATTGCTCTTCAATCGCAACAA
CAATCAATGTTACAACAATCGACTCATCAAATTGACCCACGAATTGATCCTAATCTTGTT
ACTTATACGCCAATTGATCCGCCAACAACAAGTAGTAATACGAATGAACGTACTAACGTT
AATAGTAGTGGAGCATCGAGTAAAGTATCGGATATATTGAAAAGAAAAGTACCACCCAAA
AGAAAATCACAACAAAATAATAAGAGTAAGAATCGTAACGAAGAGCAAGCACAAAATGCT
ACAAGTCTTCAGTCTACTTCAGGATCCACAGGAAGAAATACACCATCAACAAGTTCTTCA
TCATCTCGATCAAGATTCTCCGGTGCTTCTTCAAAGACTTCGTCATTTTTGGCATCACTA
AATCCAGTTCGATGGGGACGAACATCAACACATTCGACTTTTAGCAGTTCCAGTAGTTCG
AACAAAGATATAACAAATAGTCTAAATAAAAGCGCTTCAAATTCAAATCTTATTGCGGCT
GGAAATAGAGAAAAGGCACGTCAATGGATCAGAGATCAATCAATTTCTTTCGTTAAACGT
TATGCTGATCATGATTCATCAAATACCCATCCTGCACTAACAATTTTATCACGTTTAACT
TCTGCCATTCAAAAGTTTGATGGATCATATGACAACTGCTTAAAAGCCATGGAAGAATTG
AGAAATATTTTATTAGAAAGTGATATCTCTCCATTTGAAGTTAATCATAGTGGATTAATT
AAAGCAATGTTAAATTTTATGACAAACGAAAATGGAAATGTATCACGTAATGATCGTTTA
AGGTTGTTTTTAAACGTTTTTGCAAATTTGCCTCTTGATTCAAATCATAGTGGTGAAGTA
GTAATCCATCCAGCCGCATTTAGTTCATTTGTATTGAAATTAAATGGATGTGTCACACAA
TTGGAACAATTTCCTGTAAAAGTTCATGATTTTCCTACTGCTTCTGGTGGTCGCTCAAAT
ACAAGTGCTCTTAAATTTTTCAACACCCATCAATTAAAGTATCAATTTCTTCGTATCGTA
CCTGAAAATGTTATTCAAATCACATTACACAACACACAATCGATTCGCAAACACATAACT
ACAATCGTATCGGATCAAGTTTTCACGAATAGTCATATCGTCACACTACAAGAGTCCTGG
GCAGTCGACAACGAAAGTTACAATATTCCTGAGTTTGAAGAAATTTCGCGAAATCGATTG
ATAGGTCGTCCAAGAGCATTTGGAACGATCAACTTTTGCAAATTAAATATTGAGCCTCGC
ATTACAGATCGAATCGAAATTGAAAATGGTAATTCGAATAATCATGTCGAAATAAGTGGC
TTCAAATTGGACAATCGATTAACAATAATTAATGTCTACAATAATCCATCATCGAGTCTC
GAATTACTGAAGGAAACGCTTTTGGAAGTAAAAGACTATATCGATGAAAGCGAAAATATT
TTGATTCTTGGCGATTTTAATCACGAATTGAAATTGGGCAGTCTACTCGAGTCGTTCATG
CTTCAATCTTTTCACACAAGGCTATTCTCACCACGCGAATCGACAACAAACGCTCGAACA
GTTATCGATGGAGTATTCGGTCGAATTGACGACTACAATATTGAAGTTTTTATCTATGAA
TCATATTCATCTCATCACAAACCATTAGTCATTCGATGTAATCTTCAAAGGCATCCTGAT
TGTACAAATCTTCGACAATGGAAAGGTGGAGCTGTAAAAATCGATCCTTTAGCACTCGTT
CAAGCAATTGAGCGTTATCTTGTAGTACGTGGCTATGGTGGCATTCGCACAGATTCCGAA
GAAGACTCTGAAGAAGACATTGATAATATTGACACAGCAGCAATGATAACAATGGGAGGA
ACAAAGCACAAATTGCAATTTCTTATTGGCGATCATATTTTACCTTATACAATGACGGTT
TATCAAGCAATTCGACAATATTCCCCATTAGTAAATGATCAATCTGAAACTGATACTGAT
ACAGAAACACCTATAGGTAATGCAAGTATATGGATACAACAACATACAATTTATTACAGA
CCAGTTGAAGAGAATTCAAATGCAAATGCTAATAAAGTTGGAAACAGTAGTTCTCATGCT
CAATCAAGTAATTCTCTGAATTCTTCGCGCAAAAATAATAAAAATTCTATAGTAAAATTG
CAACAAAATCGTCGTAAACCCGAATTTTGGATAGAAGGCTCTGTTCCAACAGTTGTATCA
CCTCTTACTCCCTACTTGCTGCCAAAATTACCCGATTTGGAAACTGTTGAGGATGCTTCC
ATTGAAGTTTTAGCTTTGTTGAGGATACTTAATGGATTAAATCGTTATTGGCCATCTCTT
TATTACTCAGTTCCACACACACAAATTATTTCACAATCCGAATTTATTCATTCAAAGATT
GCTGCTAAGGCTAGTCGACAACTTCAGGACCCATTAGTAATTATGACTGGGAATTTACCA
ACTTGGCTTCAAGAAATTGCAACTTCTTGTCCATTCCTATTTCCATTTGAAACACGTCAT
CTCCTGTTTTATGCCATTTCTTTTGATCGTGATCGTGCTTTACAACGTTTGATAGATACT
ACACCTGATTTAAATTCTGCAGATACTTCTGAGCGAGTAACTCCACGTTTAGATCGTCGT
AAGCGTGCCATTTCTCGTGAAGATATTTTGAAGCAAGCAGAAGTTATTATACAAGATTTT
GGACATTCAAAAGCTCTACTTGAAATTCAGTATGAAAATGAAGTCGGAACAGGATTAGGA
CCGACTTTAGAGTTTTACGCCTTAGTTTCAACTGAATTACAAAGAAGTGATTTGGGTTTA
TGGAATGATACAGGCAATAGCTATAAAAACCAACAGATAGTGAATGATGTTGAGAAATTT
TCGTCAGCAAACGATGAACCATCTCAATTAATTTTCATGCACCCATCGAGTGGTGTCTCG
TCAAAAACTGTTGATAATAATATGAGAATTAGTGGAACAAATGCTACTGTGATGAATAAT
AATCAGATTAATATGCTTATCGAGCAACAACAAAATGAGACTAGTGATATTCCATTAAAT
ATGATAGATAACTCTCATCATGGTTCATCAACTACTCCAATGAATGATAATATTCAATAT
GTTAGTGCACCAAATGGAATGTTCCCACTAGCACTAAGTAAAACTGCAAAAACATCTCAA
ATCTCGAGAATAAAATTCAAATTTAAATTCTTGGGTAAATTTATGGCAAAAGCTGTGATG
GATAGTCGAATGCTTGACCTTCCGCTTTCAACACCATTTTATCGTTGGCTTTTGAATGAA
GAAACATCTCTTGGTTTATCTGATTTGGGACAGGTAGCACCAGAAGTTCAAAGCACTTTA
TTGCGTCTCAATGAAATTGTTAAGAAACGTGAAATTATCCAATCAGATCCAACATTAGAT
GCTATGGAGAAAACTGAAAGAATCGAAGCTCTTGATTTAGATGGATGTTTAATAGCTGAT
CTCGGATTAGATTTTGTTTTACCTGGATATCCAAACATTGAATTACGTCGAGGTGGACAT
GATATTCCTGTCACAATTCACAATCTTCATCAATACATATCTTTAGTATCACATTGGTTT
CTTGTTGAAGGTGTTGCTCGTCAATTTGATTCATTTCGAGAAGGTTTTAATTCCGTATTT
CCTATTCATCATTTACGAATATTTTATCCCGAGGAATTGGAAAATGTTTTCTGTGGATCA
GGCACAACAAATTTCCAAAAATGGGATGTAAAAATGTTGGCCGATTGTTGTAGAGCAGAT
CATGGATATACCCAAGAATCACTAGCCATTCAATATTTTTACGATATATTAAGTCAATAT
AATCGTGAGGAACAACGACTATTTTTGCAATTTGTAACTGGAACACCGCGTTTACCAACA
GGTGGTTTTAAATCTTTGACGCCACCCCTTACTATAGTACGAAAAAAAGTCGATGGAAAT
CAAAATCCTGATGATTACTTGCCCTCTGTTATGACATGTGTAAATTACTTGAAAATTCCC
GAATATTCGTCACGCGAAGTAATGAAAGAAAAATTGAGAATTGCTGCCAGTGAAGGCAGT
ATGAGTTTTCATCTTTCATAA

>g11771.t1 Gene=g11771 Length=2706
MAESGNKKLLSALTEGHDKELRSSARIVKSSVEKEKNTLSINSGSNNKSLSSKTQKKVVG
GSKYNKNKSLRSENTVQPSNSNTSSRKRFLNILLNSNSSTEEDSEEESTVTTVKKARRRR
RNFSSSTSSSYTSSSLTTNSNSNNIGNITSSSTQQQLKSQLSIAYHTRSRTQSVEHNEID
SPSKNDTKRSRGSAKKIGNSDREECKSSFEELVNSVKKPKENIKKTEVDHTTENSQKKLR
KLRSFSKVSLTDEEEEESSSFKHNLRRKTPSISSPSVIPKKRQRISDTNSRVSVEERNKE
LDIRISSKAKNLKEEELGARLARGGREPQFVDQDLTQPSTSSQINSQGHLPSTQIATTSQ
NLLRRSSRGKTSYTTGSCVSSTASTNTVAATSTSSSSRTSNRNVGAKGGGNSNKHQLFST
SSGNLDLESVVGTSSTRPSTSQFTMSNNDGSRSNDQQSQQQTSSSAPTFLFFHKSNSNNT
GSNDNTTTIYVPTASTSAQQSTHASVLVAGTSSSNVSSQQPGTSGGALHPDSESDDSEVG
RLQALLEARGLPPQLFSALGPRMHHLLHRTMGTNSSSKAQQLLQGLQCNDESQQLQAAIE
MCEMLVMGNEDTLAGFPIKQAVPALINLVRMEHNFDMMNHACRAFVYMLEALPRSSGTVV
DAIPALLEKLQTIQCMDVAEQSLTALEILSKRHNKAILQANGVSACLTFLEFFSTNAQHA
ALAITANCCLNLQTEEFQFVKESLPLLARLLSQHDKKSVERICNAFYRLIDSFQHDPVIL
QEIASMELLKNCQQLLVVTPPVLNTVTFTNVVRMMSVMCANCPDLAITLLKNDIASTLLY
LLTNSATRTSNVEVELVQRSPSELYEITCLIGELMPRLPNDGIFGVDMLLERSNNTAQDA
IQWQWRDEKGIWRPYSAIDSRIIEAAHQNSDEEISLSTMGRTYTIDFHAMQQINEDSGTT
RAVQRKINTHIEQTQVVLSNTGNVGVNSGSGGMDNEGFSGMINLSTRPPSATRDARIACL
KEERGLAAEFIKNLFSVLYEVYSSSAGPSVRYKCLRALLRMVYFANADLLKEVLKNQLVS
SHIAGMMASNDLRIVVGALQMAEILMQKLPDVFGVHFRREGVMHQINQLADPLVPICSAP
SPKSNLQTTSAPPSANLTTTTAQMTQFDFETITQKGGVSGLPGTSSQAHVKNLNASLASA
SKMTTMTMPSTSASLLPSAQIVGTPGTFAINLNTANVSGNKLMNTNTTLDTLNNASASTT
PSPNGNLLMNAIYHIPEPNALRNYHGGYHHHPGLHGGNIYSTTVPQSNNMYQSVVASAAP
VHHLHHHHHSHHTIALQSQQQSMLQQSTHQIDPRIDPNLVTYTPIDPPTTSSNTNERTNV
NSSGASSKVSDILKRKVPPKRKSQQNNKSKNRNEEQAQNATSLQSTSGSTGRNTPSTSSS
SSRSRFSGASSKTSSFLASLNPVRWGRTSTHSTFSSSSSSNKDITNSLNKSASNSNLIAA
GNREKARQWIRDQSISFVKRYADHDSSNTHPALTILSRLTSAIQKFDGSYDNCLKAMEEL
RNILLESDISPFEVNHSGLIKAMLNFMTNENGNVSRNDRLRLFLNVFANLPLDSNHSGEV
VIHPAAFSSFVLKLNGCVTQLEQFPVKVHDFPTASGGRSNTSALKFFNTHQLKYQFLRIV
PENVIQITLHNTQSIRKHITTIVSDQVFTNSHIVTLQESWAVDNESYNIPEFEEISRNRL
IGRPRAFGTINFCKLNIEPRITDRIEIENGNSNNHVEISGFKLDNRLTIINVYNNPSSSL
ELLKETLLEVKDYIDESENILILGDFNHELKLGSLLESFMLQSFHTRLFSPRESTTNART
VIDGVFGRIDDYNIEVFIYESYSSHHKPLVIRCNLQRHPDCTNLRQWKGGAVKIDPLALV
QAIERYLVVRGYGGIRTDSEEDSEEDIDNIDTAAMITMGGTKHKLQFLIGDHILPYTMTV
YQAIRQYSPLVNDQSETDTDTETPIGNASIWIQQHTIYYRPVEENSNANANKVGNSSSHA
QSSNSLNSSRKNNKNSIVKLQQNRRKPEFWIEGSVPTVVSPLTPYLLPKLPDLETVEDAS
IEVLALLRILNGLNRYWPSLYYSVPHTQIISQSEFIHSKIAAKASRQLQDPLVIMTGNLP
TWLQEIATSCPFLFPFETRHLLFYAISFDRDRALQRLIDTTPDLNSADTSERVTPRLDRR
KRAISREDILKQAEVIIQDFGHSKALLEIQYENEVGTGLGPTLEFYALVSTELQRSDLGL
WNDTGNSYKNQQIVNDVEKFSSANDEPSQLIFMHPSSGVSSKTVDNNMRISGTNATVMNN
NQINMLIEQQQNETSDIPLNMIDNSHHGSSTTPMNDNIQYVSAPNGMFPLALSKTAKTSQ
ISRIKFKFKFLGKFMAKAVMDSRMLDLPLSTPFYRWLLNEETSLGLSDLGQVAPEVQSTL
LRLNEIVKKREIIQSDPTLDAMEKTERIEALDLDGCLIADLGLDFVLPGYPNIELRRGGH
DIPVTIHNLHQYISLVSHWFLVEGVARQFDSFREGFNSVFPIHHLRIFYPEELENVFCGS
GTTNFQKWDVKMLADCCRADHGYTQESLAIQYFYDILSQYNREEQRLFLQFVTGTPRLPT
GGFKSLTPPLTIVRKKVDGNQNPDDYLPSVMTCVNYLKIPEYSSREVMKEKLRIAASEGS
MSFHLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g11771.t1 CDD cd00078 HECTc 2224 2704 2.62816E-95
17 g11771.t1 Coils Coil Coil 1400 1420 -
11 g11771.t1 Gene3D G3DSA:1.25.10.10 - 577 857 1.1E-22
16 g11771.t1 Gene3D G3DSA:3.30.720.50 - 886 971 4.9E-21
13 g11771.t1 Gene3D G3DSA:3.90.1750.10 Hect 2201 2315 2.6E-5
12 g11771.t1 Gene3D G3DSA:3.90.1750.10 Hect 2405 2576 1.6E-31
14 g11771.t1 Gene3D G3DSA:3.30.2160.10 Hect 2441 2544 1.6E-31
15 g11771.t1 Gene3D G3DSA:3.30.2410.10 Hect 2587 2706 4.7E-31
25 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 138 -
24 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 12 33 -
23 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 34 99 -
28 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 123 138 -
29 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 167 296 -
27 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 171 264 -
22 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 265 283 -
21 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 336 465 -
30 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 502 539 -
32 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 502 527 -
34 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 1320 1453 -
26 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 1334 1354 -
35 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 1363 1389 -
31 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 1410 1453 -
33 g11771.t1 MobiDBLite mobidb-lite consensus disorder prediction 2032 2055 -
4 g11771.t1 PANTHER PTHR45670 E3 UBIQUITIN-PROTEIN LIGASE TRIP12 566 1688 0.0
6 g11771.t1 PANTHER PTHR45670:SF1 E3 UBIQUITIN-PROTEIN LIGASE TRIP12 566 1688 0.0
3 g11771.t1 PANTHER PTHR45670 E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1891 2706 0.0
5 g11771.t1 PANTHER PTHR45670:SF1 E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1891 2706 0.0
1 g11771.t1 Pfam PF02825 WWE domain 902 965 1.9E-18
2 g11771.t1 Pfam PF00632 HECT-domain (ubiquitin-transferase) 2382 2706 1.9E-81
36 g11771.t1 ProSiteProfiles PS50918 WWE domain profile. 889 965 24.018
37 g11771.t1 ProSiteProfiles PS50237 HECT domain profile. 2408 2706 66.798
19 g11771.t1 SMART SM00678 deltex 898 973 1.5E-24
20 g11771.t1 SMART SM00119 hect_3 2234 2706 5.5E-97
7 g11771.t1 SUPERFAMILY SSF48371 ARM repeat 579 1131 6.63E-35
10 g11771.t1 SUPERFAMILY SSF117839 WWE domain 884 967 7.32E-21
8 g11771.t1 SUPERFAMILY SSF56219 DNase I-like 1687 1891 8.1E-10
9 g11771.t1 SUPERFAMILY SSF56204 Hect, E3 ligase catalytic domain 2213 2699 9.81E-95

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008270 zinc ion binding MF
GO:0004842 ubiquitin-protein transferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values