General information for g1179.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein hairless.
Parent gene
- The parent gene g1179 is located on chr_3: 8498507..8503387 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1179 | g1179.t1 | TSS | g1179.t1 | 8498060 | 8498060 |
| chr_3 | g1179 | g1179.t1 | isoform | g1179.t1 | 8498507 | 8503387 |
| chr_3 | g1179 | g1179.t1 | exon | g1179.t1.exon1 | 8498507 | 8498678 |
| chr_3 | g1179 | g1179.t1 | cds | g1179.t1.CDS1 | 8498507 | 8498678 |
| chr_3 | g1179 | g1179.t1 | exon | g1179.t1.exon2 | 8501132 | 8501281 |
| chr_3 | g1179 | g1179.t1 | cds | g1179.t1.CDS2 | 8501132 | 8501281 |
| chr_3 | g1179 | g1179.t1 | exon | g1179.t1.exon3 | 8501352 | 8503292 |
| chr_3 | g1179 | g1179.t1 | cds | g1179.t1.CDS3 | 8501352 | 8503292 |
| chr_3 | g1179 | g1179.t1 | exon | g1179.t1.exon4 | 8503359 | 8503387 |
| chr_3 | g1179 | g1179.t1 | cds | g1179.t1.CDS4 | 8503359 | 8503387 |
| chr_3 | g1179 | g1179.t1 | TTS | g1179.t1 | NA | NA |
Sequences
>g1179.t1 Gene=g1179 Length=2292
ATGTCAAAAGAGATTGAAAATTTGAAAAATGGAGTTTTAAATGGAGATTCTGTGATAACT
AATAATCACATTCAACAGCAGCAACAGCAACAGACAAAATTGAATAATAATTCTAATGTG
GATTCTACAACAACGAAAGCGATAGTGGGTGGAAGATTACAATTTTATAAAGATGGAAAA
TTTATATTGGAACTAGCACGTGCGCGGGAAGGTGAAAAGACGGGATGGATTTCTGTGCCG
AGAAAGACATATTGGCCACCGACAATATCAACAAATTCAAGTACAACATTTAGTAAACAT
GAAAGCTCGACATCATTGAGTTATTCCGATGACAATAGTTCGATACAATCATCACCATGG
CAAAGAGATCATTGTTGGAAACAATCGAGGCCTCGTCACAATATTTCAAAAGAGATGGCC
TTCTTTTACAATCGTCCCGAGCAATTTTGTCTTACTGGAGACAGCACAAAAATTGCAAAA
ACAATGCGTCGAAGACCACACAATAAATGCAACAGTAATGTCAAGTTCATGAAGAAAAAG
GAAAAGAATGGAATTGATGAAGCTTCGAGTGAATCAAATGATAGTGATGAAAAAGAATCT
TCATCACAGAATGATTCCAAGGAAAGCATTGATACATTAGATGGAAATAATAAAACAACA
AATGATAAAAATGGCAACACTCATAAACTTGACAATATTCTCAAGAAACTTGCTGATCGA
ATGGCATCAAAATTGGCGCTTAATGGAAATAATATGAATGGTACACATAATAATAATAAC
AATGGTCATCATCATTCTATACCAACAAGTTATTCACTTGCATCACATATTGCAAATTCA
ATCAATTCTAATTCTCAGCCACATCAACATGTGTCACCACGTAAACGAATTCTCAGAGAA
CTCGAAAAAGTATCACTTGAAGATACTAAAAGATCACGACCAAAATCCATTGTGACTGCA
ACAATTGCAATGACAAATGGAAATGGCTCAATAGCATCAACACCACCAATATCTGTCGCA
AACATTCATTCAAGTTCAAATGGAAGTCTGAAAACTGAAAAAGCAACACCGCCCGCATCT
CGTCCAATTAGCAGTTACAGCATTACATCACTACTGGCACACAACACCTCTTCATCGAGT
AATAGCAGTAACAATAGTAATGCATCAGTTGGCTGTAATAATAATAATAATAATAGTATT
AGTTCCAATGACTCATCTTCAGCTAGTCACTATCATCAGCAACCTAAATCGCCATCATTG
ATGCAAAATAAACGAAAGTCGCCCAATACAACACCTACACCGCCTACACAAAGTCCGAGT
CCTGAGCATCATGCTTTTCATAAATATCGACCAATTACAACGACACCAACGTCTTCGTCG
CCTTATAGCAATAGTTATCATTCACCTAACTATATGCGAGGCTCGCCTTCACCTCATGAT
CGTTTACGTACTACTTCTAGCTTCTCGCCTTCGCATTCATATGCTGGCACATCATCACCA
CATCATAATAATAATAATTATGGAGGAACTGGAAGAGAAAGAGACTCAAGTCTTTCGCCA
AATGTTGAGCGAAATAGTAGTCAACGAAGCACACCAACAACTACATCAACAATTCGAACT
GTTCCAAAGAAGACTGCCGCATTGCGTCAGCAATTTAGCTCACCAACAATGGAGAGTTCA
AGCAAGATGAGCAAATCTTCTGCAGCAGCAGTAACGACAACGACCGCACAAAATGTAAAA
AATGAAAAACCAATGGATGTCGATGCATTATTGCGTCCATCAGCATTAATTCCACCTCCA
TCAATGTCAACCGCAGCAGCAATGACGACACATCCTGCTGCAGCTCAATTAAGTCATTAT
CCGTACATGTATTCGCCGTTAAGTTACTTACCGCACGCAGTGTCGCCTTATTATCATCCC
TCATTTTATAATCCTGCAATGATGGCGGCAGCGGCTGCTGCAGCTTATCGCTTTCCTGGC
GCAATGTCTTATCCGCCTATGCCAAGTACTTTGTCATCACCTCCACCAATTACTTCCGCC
TCATCTTCCTCTTCTTCGCCAATAATTGATCGAAATGCAAATGGTCATCAAAGAAATGTG
TCCATTTCATCCTCTTCTTCACCATCAGCAGTTAGTAGCACAACAACGGCACATCATCAT
CCACCATATGTACATTCATCACCATGGAATCCAATATCATTAACAAATCTTCATCATCCC
GATGGTAATTTAATTCCAAAAGTAAAGAATGAACAACATTCAGACGTCCCACTTAATTTA
TCGAAACATTAG
>g1179.t1 Gene=g1179 Length=763
MSKEIENLKNGVLNGDSVITNNHIQQQQQQQTKLNNNSNVDSTTTKAIVGGRLQFYKDGK
FILELARAREGEKTGWISVPRKTYWPPTISTNSSTTFSKHESSTSLSYSDDNSSIQSSPW
QRDHCWKQSRPRHNISKEMAFFYNRPEQFCLTGDSTKIAKTMRRRPHNKCNSNVKFMKKK
EKNGIDEASSESNDSDEKESSSQNDSKESIDTLDGNNKTTNDKNGNTHKLDNILKKLADR
MASKLALNGNNMNGTHNNNNNGHHHSIPTSYSLASHIANSINSNSQPHQHVSPRKRILRE
LEKVSLEDTKRSRPKSIVTATIAMTNGNGSIASTPPISVANIHSSSNGSLKTEKATPPAS
RPISSYSITSLLAHNTSSSSNSSNNSNASVGCNNNNNNSISSNDSSSASHYHQQPKSPSL
MQNKRKSPNTTPTPPTQSPSPEHHAFHKYRPITTTPTSSSPYSNSYHSPNYMRGSPSPHD
RLRTTSSFSPSHSYAGTSSPHHNNNNYGGTGRERDSSLSPNVERNSSQRSTPTTTSTIRT
VPKKTAALRQQFSSPTMESSSKMSKSSAAAVTTTTAQNVKNEKPMDVDALLRPSALIPPP
SMSTAAAMTTHPAAAQLSHYPYMYSPLSYLPHAVSPYYHPSFYNPAMMAAAAAAAYRFPG
AMSYPPMPSTLSSPPPITSASSSSSSPIIDRNANGHQRNVSISSSSSPSAVSSTTTAHHH
PPYVHSSPWNPISLTNLHHPDGNLIPKVKNEQHSDVPLNLSKH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 228 | - |
| 7 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 205 | - |
| 4 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 223 | - |
| 1 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 431 | - |
| 3 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 443 | - |
| 5 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 575 | - |
| 2 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 575 | - |
| 8 | g1179.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 720 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06064 (hairless)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
