Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Protein hairless.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1179 g1179.t3 TSS g1179.t3 8498060 8498060
chr_3 g1179 g1179.t3 isoform g1179.t3 8498507 8501568
chr_3 g1179 g1179.t3 exon g1179.t3.exon1 8498507 8498678
chr_3 g1179 g1179.t3 cds g1179.t3.CDS1 8498507 8498678
chr_3 g1179 g1179.t3 exon g1179.t3.exon2 8501132 8501281
chr_3 g1179 g1179.t3 cds g1179.t3.CDS2 8501132 8501281
chr_3 g1179 g1179.t3 exon g1179.t3.exon3 8501352 8501568
chr_3 g1179 g1179.t3 cds g1179.t3.CDS3 8501352 8501566
chr_3 g1179 g1179.t3 TTS g1179.t3 8501561 8501561

Sequences

>g1179.t3 Gene=g1179 Length=539
ATGTCAAAAGAGATTGAAAATTTGAAAAATGGAGTTTTAAATGGAGATTCTGTGATAACT
AATAATCACATTCAACAGCAGCAACAGCAACAGACAAAATTGAATAATAATTCTAATGTG
GATTCTACAACAACGAAAGCGATAGTGGGTGGAAGATTACAATTTTATAAAGATGGAAAA
TTTATATTGGAACTAGCACGTGCGCGGGAAGGTGAAAAGACGGGATGGATTTCTGTGCCG
AGAAAGACATATTGGCCACCGACAATATCAACAAATTCAAGTACAACATTTAGTAAACAT
GAAAGCTCGACATCATTGAGTTATTCCGATGACAATAGTTCGATACAATCATCACCATGG
CAAAGAGATCATTGTTGGAAACAATCGAGGCCTCGTCACAATATTTCAAAAGAGATGGCC
TTCTTTTACAATCGTCCCGAGCAATTTTGTCTTACTGGAGACAGCACAAAAATTGCAAAA
ACAATGCGTCGAAGACCACACAATAAATGCAACAGTAATGTCAAGTTCATGAAGAAAAA

>g1179.t3 Gene=g1179 Length=179
MSKEIENLKNGVLNGDSVITNNHIQQQQQQQTKLNNNSNVDSTTTKAIVGGRLQFYKDGK
FILELARAREGEKTGWISVPRKTYWPPTISTNSSTTFSKHESSTSLSYSDDNSSIQSSPW
QRDHCWKQSRPRHNISKEMAFFYNRPEQFCLTGDSTKIAKTMRRRPHNKCNSNVKFMKK

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed