General information for g11799.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family B member 6, mitochondrial.
Parent gene
- The parent gene g11799 is located on chr_1: 18489541..18490410 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11799 | g11799.t1 | isoform | g11799.t1 | 18488891 | 18489872 |
| chr_1 | g11799 | g11799.t1 | exon | g11799.t1.exon1 | 18488891 | 18489493 |
| chr_1 | g11799 | g11799.t1 | cds | g11799.t1.CDS1 | 18488891 | 18489493 |
| chr_1 | g11799 | g11799.t1 | exon | g11799.t1.exon2 | 18489561 | 18489872 |
| chr_1 | g11799 | g11799.t1 | cds | g11799.t1.CDS2 | 18489561 | 18489872 |
| chr_1 | g11799 | g11799.t1 | TSS | g11799.t1 | 18490417 | 18490417 |
| chr_1 | g11799 | g11799.t1 | TTS | g11799.t1 | NA | NA |
Sequences
>g11799.t1 Gene=g11799 Length=915
ATGAATTTTAATATTACGGACTTTTGTCCTAAAAACATTAGCTTCAGTGATATTTGGATA
AATCATTCACTAAATCAATGTTTCTTCGATACAGTATCCAGTTCAATTTTAGCAGCATAT
ATTCTTATTTTTGGAACCATTCAAATAGTAATATACCGAAAATATGCAACTCGTATTGCG
GATAGACGTTTGCAATCTTCTTTCTTTTATTCTCTTCAATTATTTTTAATGCTCTTATTA
CCTATATTATGTGTTGTACGTTTGATATTAAGATGGAAAGTTTATGAACCTTCACAAATA
TATGGATACATGATTGCATATACAATTTTATCAATTTTTGGATACATGTTTGCAATATGT
CTAATTCTAAAAGAAAGACACTATCAACTTCCCGCAACTCCATCAAGAGGACATGGATTG
ACTCTTCTTTTCTTTTTCACACTAGTTTTCATATGTCAAAATTTGGCATTAGTTAATCTG
AATGGCGATAATTGGTGGTTTGCAATGAAATCAAGGACTGACAAAATTGAAATGGGCCTT
TTTATTACACGTTATATATGTACACTGTTTGTTTTTGTACTTGGTCTAAAAGCTCCAGGC
ATTCAAAGTATAGCAACAGAAGAAGAATCTTCATTAGTTACAGAGGAAAACGATAATGCG
GAAAATCGCTCAACGTTTCGAAATGCATACAAAAAAATGAAGACACTATTTCCCTATTTA
TGGCCAAAAAAGAATTTTTTACTACAGGCACGTGTGATTTTTTGTTTCGTGCTTTTGATT
GCTGGACGTATGATCAATGTTTATGTACCTATTTACAATAAGAAAATTGTTGATTCGTTG
TCTGGAGAAAATGCTACATTTAGATGGGATTGGATTTGCATATATGTAGCATTCAAATTT
CTACAAGTTAAGTAA
>g11799.t1 Gene=g11799 Length=304
MNFNITDFCPKNISFSDIWINHSLNQCFFDTVSSSILAAYILIFGTIQIVIYRKYATRIA
DRRLQSSFFYSLQLFLMLLLPILCVVRLILRWKVYEPSQIYGYMIAYTILSIFGYMFAIC
LILKERHYQLPATPSRGHGLTLLFFFTLVFICQNLALVNLNGDNWWFAMKSRTDKIEMGL
FITRYICTLFVFVLGLKAPGIQSIATEEESSLVTEENDNAENRSTFRNAYKKMKTLFPYL
WPKKNFLLQARVIFCFVLLIAGRMINVYVPIYNKKIVDSLSGENATFRWDWICIYVAFKF
LQVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11799.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 215 | 303 | 2.4E-15 |
| 1 | g11799.t1 | Pfam | PF16185 | Mitochondrial ABC-transporter N-terminal five TM region | 8 | 242 | 1.3E-86 |
| 15 | g11799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 36 | - |
| 22 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 56 | - |
| 12 | g11799.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 57 | 67 | - |
| 21 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 89 | - |
| 14 | g11799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 90 | 100 | - |
| 19 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 123 | - |
| 10 | g11799.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 124 | 138 | - |
| 17 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 139 | 158 | - |
| 13 | g11799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 159 | 177 | - |
| 18 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 178 | 196 | - |
| 11 | g11799.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 197 | 251 | - |
| 20 | g11799.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 271 | - |
| 16 | g11799.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 272 | 304 | - |
| 8 | g11799.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 234 | 302 | 4.19E-5 |
| 3 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 33 | 52 | - |
| 2 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 89 | - |
| 7 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 101 | 123 | - |
| 4 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 138 | 160 | - |
| 6 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 180 | 202 | - |
| 5 | g11799.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 247 | 269 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
