General information for g11822.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ubiquitin-conjugating enzyme E2 Q2.
Parent gene
- The parent gene g11822 is located on chr_1: 18586869..18588999 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11822 | g11822.t1 | TSS | g11822.t1 | 18584731 | 18584731 |
| chr_1 | g11822 | g11822.t1 | isoform | g11822.t1 | 18584928 | 18586869 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon1 | 18584928 | 18585089 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS1 | 18584928 | 18585089 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon2 | 18585541 | 18585657 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS2 | 18585541 | 18585657 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon3 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS3 | 18585720 | 18586058 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon4 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS4 | 18586118 | 18586409 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon5 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS5 | 18586495 | 18586643 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon6 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS6 | 18586706 | 18586772 |
| chr_1 | g11822 | g11822.t1 | exon | g11822.t1.exon7 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t1 | cds | g11822.t1.CDS7 | 18586838 | 18586869 |
| chr_1 | g11822 | g11822.t1 | TTS | g11822.t1 | 18587241 | 18587241 |
Sequences
>g11822.t1 Gene=g11822 Length=1158
ATGGCATGTTTGAATAATTTAAAGTCAGAAATAAAGACACTAGAAAAGCTATTTCCTAAA
AGCCATGAAAGATTTGCTATAATAAACGCTAGTGTAGATGAATTAACGTGTCGATTTATT
ACAAAAAGTGGCAAAAAATTTGATATTCATGCAAATATTACGGAGACATACCCTACCACT
CCTCCGGTTTGGTTTGCTGATATTGAAGAACCTAATATAACGAATGCAATTCAATTACTT
AGCAATACAAGTGGACTAGATAACCACGTTATTAATCAAGCTAGAATATTATTAGGAGAA
TTGTGCACTATTCACTCCTGTCCTCTTCCGATTGAGGTTCATCAACTCAACACGTTCCAT
TCGATGCCCACTAGTTCAACTCACAATCATAGTTTGAACAATGGAAAAACTCCAGCAAAA
AATCATCAAGACGAAATTGATACTGATCCAGAAGATCTAGAAGATGCTGTTGGTGAAAGC
GAAGATTCAGATGCTGAAGAAGATTTACCTCTGGAATTAGACGATGGACGCAGTGCCAGT
AAAAAAGATGAAATGGAAGTAGAACATTTAGCGACATTGGAGAGATTAAGACAAACACAG
AGACAAGACTATTTAAGGGGTTCTGTATCGGGAAGCGTTCAAGCAACTGATCGACTGATG
AAAGAGTTGCGAGATATTTATCGCTCAGATTCTTTTAAAAGGAATATTTATTCGATTGAA
TTAGTTAATGATTCAATATATGAGTGGAATATTCGGCTTATGTCCGTTGATCCAGATAGT
CCTCTTCACAATGATCTGCTTATGCTTAAAGAAAAAGAAGGAAAAGATAGCATTCTTTTG
AATATCATATTTAAAGAAACTTATCCTTTTGAACCACCTTTTGTTCGCGTTGTTCATCCA
ATTATATCAGGCGGATATGTTTTATTAGGCGGTGCAATTTGCATGGAACTTTTGACGAAA
CAGGGGTGGAGCTCAGCTTACACAGTAGAAGCTCTGATAATGCAAATTTCAGCAACTTTA
GTGAAAGGAAAGGCGCGTATTCAATTTGGGGCAACAAAGGGTCAATATAGTTTGGCACGT
GCACAGCAAAGCTTTAAGTCATTGGTCCAGATACATGAGAAAAACGGATGGTTTACTCCT
CCAAAAGAAGATGGATAA
>g11822.t1 Gene=g11822 Length=385
MACLNNLKSEIKTLEKLFPKSHERFAIINASVDELTCRFITKSGKKFDIHANITETYPTT
PPVWFADIEEPNITNAIQLLSNTSGLDNHVINQARILLGELCTIHSCPLPIEVHQLNTFH
SMPTSSTHNHSLNNGKTPAKNHQDEIDTDPEDLEDAVGESEDSDAEEDLPLELDDGRSAS
KKDEMEVEHLATLERLRQTQRQDYLRGSVSGSVQATDRLMKELRDIYRSDSFKRNIYSIE
LVNDSIYEWNIRLMSVDPDSPLHNDLLMLKEKEGKDSILLNIIFKETYPFEPPFVRVVHP
IISGGYVLLGGAICMELLTKQGWSSAYTVEALIMQISATLVKGKARIQFGATKGQYSLAR
AQQSFKSLVQIHEKNGWFTPPKEDG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11822.t1 | CDD | cd00195 | UBCc | 216 | 372 | 3.54951E-28 |
| 5 | g11822.t1 | Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 209 | 377 | 3.2E-58 |
| 8 | g11822.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 171 | - |
| 9 | g11822.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 185 | - |
| 2 | g11822.t1 | PANTHER | PTHR24068:SF56 | UBIQUITIN-CONJUGATING ENZYME E2 Q1 | 123 | 382 | 2.2E-100 |
| 3 | g11822.t1 | PANTHER | PTHR24068 | UBIQUITIN-CONJUGATING ENZYME E2 | 123 | 382 | 2.2E-100 |
| 1 | g11822.t1 | Pfam | PF00179 | Ubiquitin-conjugating enzyme | 219 | 343 | 8.7E-9 |
| 10 | g11822.t1 | ProSiteProfiles | PS50127 | Ubiquitin-conjugating enzymes family profile. | 217 | 340 | 14.147 |
| 7 | g11822.t1 | SMART | SM00212 | ubc_7 | 217 | 378 | 3.4E-7 |
| 4 | g11822.t1 | SUPERFAMILY | SSF54495 | UBC-like | 212 | 371 | 9.4E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10582 (ubiquitin-conjugating enzyme E2 Q)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
